Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F178 I0 R1
|
39 |
50.1 |
1100758 |
94.0% |
1034712 |
140.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
CP000730 |
2,501,188 |
Δ3,014 bp |
100% |
|
USA300HOU_2364 |
USA300HOU_2364 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP000730 |
2501188 |
2504201 |
3014 |
54 [1] |
[1] 54 |
USA300HOU_2364 |
USA300HOU_2364 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP000730 |
= 2501187 | 1 (0.020) | 45 (1.100) |
37/230 |
NT |
97.9% |
intergenic (+1198/‑290) |
USA300HOU_2363/USA300HOU_2364 |
hypothetical protein/AraC transcriptional regulator |
| ? | CP000730 |
2504202 = |
1 (0.020) | intergenic (+620/‑138) |
USA300HOU_2364/USA300HOU_2365 |
AraC transcriptional regulator/hypothetical protein |
GATK/CNVnator alignment
N/A
