Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F184 I0 R1 46 69.8 1527574 94.8% 1448140 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,454,626 A→T 100% L48L (CTA→CTT)  USA300HOU_2315 → hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,454,6260AT100.0% 194.6 / NA 64L48L (CTA→CTT) USA300HOU_2315hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (40/24);  total (40/24)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TAAAATTTCTGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTAGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAATT  >  CP000730/2454494‑2454758
                                                                                                                                    |                                                                                                                                    
tAAAATTTCTGGTTTTCAATGTGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAAAACTTTATATTTGAAGTTACAGATCTTGCACCAt                                                                                                                               >  1:393181/1‑140 (MQ=255)
tAAAATTTCTGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCAt                                                                                                                               >  1:694523/1‑140 (MQ=255)
tAAAATTTCTGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACAAt                                                                                                                               >  1:64617/1‑140 (MQ=255)
tAAAATTTCTGGTTTTCAATGAGCAATCACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCAt                                                                                                                               <  1:528146/140‑1 (MQ=255)
 aaaaTTTCTGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCAtt                                                                                                                              <  1:68148/140‑1 (MQ=255)
    aTTTCTGGTTTTCAATGGGGAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAACTTACAGATCTTGCACCATTAAt                                                                                                                           <  2:554548/140‑1 (MQ=255)
         tGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATtgctg                                                                                                                      <  2:205842/140‑1 (MQ=255)
              ttCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATc                                                                                                                 >  1:572459/1‑140 (MQ=255)
                  aTGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGAGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATAAttt                                                                                                             >  2:112252/1‑140 (MQ=255)
                    gggCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGt                                                                                                           >  2:622466/1‑140 (MQ=255)
                     ggCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCAATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACCCTTTATATTTGAAGTTACAGATCTTGCACCATTAATCGCTGCAATAATTTGta                                                                                                          >  2:145963/1‑140 (MQ=255)
                       ccaTGACGATTTTCGTCTTCTTTGTCATTACATTGGCGTTATCCATTATTCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGtata                                                                                                        <  2:447414/138‑1 (MQ=255)
                        aaggACGATTTTCGTCTTCTTTGTCATTACAATTGCGTTATCCATTAAGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTAGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATAc                                                                                                       <  2:339268/137‑1 (MQ=255)
                        aaTGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATAc                                                                                                       <  2:368515/140‑1 (MQ=255)
                         aTGACGATTTTCGTCTTCTTTGTCATTACAATGGCTTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACt                                                                                                      <  1:265710/140‑1 (MQ=255)
                          tGACGCTTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTc                                                                                                     <  2:617688/140‑1 (MQ=255)
                                 tttCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCa                                                                                              >  1:472708/1‑140 (MQ=255)
                                    cGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTTTAAAACACTTTATATTTGAAGTTACAGATCTTGCAAAATTAATTGCTGCAATCATTTGTATACTCGTTTTCaaaa                                                                                           >  1:34036/1‑139 (MQ=255)
                                    cGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAat                                                                                           >  1:212300/1‑140 (MQ=255)
                                    cGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTAAAACACTTTATATTTGAAGTTACAGATTTTGCACCTTTAAATGCTGCAATCATTTGTATACTCGTTTTCAAat                                                                                           >  1:616929/1‑140 (MQ=255)
                                            ttGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTCGTATACTCGTTTTCAAATATAAAAAg                                                                                   <  2:472708/140‑1 (MQ=255)
                                                cATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGTTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTcc                                                                               >  1:213474/1‑140 (MQ=255)
                                                     cAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACtt                                                                          <  1:236295/140‑1 (MQ=255)
                                                        tGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACCTGCa                                                                       >  1:203144/1‑140 (MQ=255)
                                                          gCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAACTATAAAAAGGTCCAACTTGCAgg                                                                     >  2:592741/1‑140 (MQ=255)
                                                               aTCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAACAGGTCCACCTTTCAGGtctga                                                                >  2:760800/1‑136 (MQ=255)
                                                               aTCCATTATGCTCAGAGATTTCCAGTCTATAAGTGGTGTCAAACACTTTATATTTGAAGTTATAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTaa                                                                >  1:545599/1‑140 (MQ=255)
                                                                 ccATTCTGCTCAGAGATTTCCAGTCTATACTTGGAGTCAAACACTTTATCTTTCAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTAAAATAAAAAACGGTCCAACTTGCAGGTTTaaaa                                                              >  2:380499/1‑140 (MQ=255)
                                                                  cATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAAt                                                             >  2:413187/1‑140 (MQ=255)
                                                                  cATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTACTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGTTCCAACTTGCAGGTTTAAAAt                                                             >  1:225782/1‑140 (MQ=255)
                                                                      aTGCTCAGAGATTTCCAGTCCATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATGTAAAAAGATCCAACTTGCGGGTTTAAAATtctc                                                         >  1:461355/1‑140 (MQ=255)
                                                                       tGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCa                                                        >  1:722621/1‑140 (MQ=255)
                                                                             gagaTTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGc                                                  <  2:213474/140‑1 (MQ=255)
                                                                               gaTTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCt                                                <  1:514495/140‑1 (MQ=255)
                                                                               gaTTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCt                                                <  1:645056/140‑1 (MQ=255)
                                                                                aTTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTg                                               >  1:91022/1‑140 (MQ=255)
                                                                                 tttCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCAATAATTTCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTGTCAATCAGCCTGa                                              >  1:457307/1‑140 (MQ=255)
                                                                                   tCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGAACAATTAATTGCTGCAATAATTTGTATACTAGTTTTCAAATATAAAAAGGTACAACTTGCAGGTTTAAAATTCTCAATCAGCCTGaaa                                            >  1:64957/1‑140 (MQ=255)
                                                                                      aGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTa                                         <  2:649505/140‑1 (MQ=255)
                                                                                       gtttataATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTaa                                        <  1:96413/137‑1 (MQ=255)
                                                                                         cTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAAtt                                      <  2:490159/140‑1 (MQ=255)
                                                                                         cTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAAtt                                      <  2:262534/140‑1 (MQ=255)
                                                                                                tcgcttCAAACACCTTATATCTCTACTTACAGATCTTTCACCACTAATTGCTCGAATCATTTGTATACGCGGTTTCAAAGATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTc                               <  1:533093/135‑1 (MQ=255)
                                                                                                tGGTGTCAAACACTTTATATTTGAAGTTACAGATTTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTc                               <  2:34036/140‑1 (MQ=255)
                                                                                                    gtCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTAtt                           >  1:16150/1‑140 (MQ=255)
                                                                                                    gtCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTATCAAAAAAAAAAAAGTCCAACTAGCAGATTAAAAAAACTCAATCAGCCTGAAAGTAATTGAACGACTAtt                           >  1:20889/1‑140 (MQ=255)
                                                                                                     tCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTCATTGCTGCACCCACTTGACTCCTCGTTTTCCAATATAAACAGGTCCACCTTGCAGGTTTACACTTCTCACTCAGCCTGCAAGTAACTGAACGTTTCTTg                          >  2:48617/1‑140 (MQ=255)
                                                                                                     tCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTg                          >  2:431117/1‑140 (MQ=255)
                                                                                                     tCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTg                          <  1:214604/140‑1 (MQ=255)
                                                                                                     tCAAACACTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTg                          >  2:48612/1‑140 (MQ=255)
                                                                                                          cacTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCATTTGCTAGc                     >  2:564823/1‑140 (MQ=255)
                                                                                                            cTTTATATTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAAAATAAAAAGGAACAACTTGAAGGTTTAAAATTCTAAATAAGCCGGAAAGTAATTAAACGTCTATTGCTAGCtt                   >  1:48123/1‑140 (MQ=255)
                                                                                                               tataTTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATAATCGTTTTCAATTATAAAAAGGTCCAACTTGCAGGCTTAAAATTGTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTaa                >  2:729981/1‑140 (MQ=255)
                                                                                                                atatgggAAGATACAGAGCTTGCACCATTAATTTCTGCAATCATTTTTATACTCGTGTTCAAATATAAAAAGGTCCTACTTGCAGGTTTAAAATTCTGAATCAGCCTGAAAGGAATTGGACGCCTTTTTCTAGCTTTAAt               <  2:130094/134‑1 (MQ=255)
                                                                                                                  atTTGAAGTTACATATCTTGCACTATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAAttt             <  1:418682/140‑1 (MQ=255)
                                                                                                                  atTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAAttt             >  2:644188/1‑140 (MQ=255)
                                                                                                                  atTTGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTAGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAAttt             >  1:28283/1‑140 (MQ=255)
                                                                                                                   tttGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAACAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAAtttt            >  2:321822/1‑140 (MQ=255)
                                                                                                                   tttGAAGTTACAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAAATTGCAGGTTTAAACTTCTAAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAAtttt            >  1:100574/1‑140 (MQ=255)
                                                                                                                            aCAGATCTTTCACCATTAATTGCTGCAATCATTTGTATACCCGTTCTTTCATCTAAAAAAGTCCACGTTGTTGTGTTGATATCCTCTAACCGCACGAAAGTAATTGTAAGTCTGTTTATAGCTTTAATTTTATCTTTact   >  2:185844/1‑138 (MQ=255)
                                                                                                                            aCAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAat   >  2:182701/1‑140 (MQ=255)
                                                                                                                            aCAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAat   >  2:26474/1‑140 (MQ=255)
                                                                                                                             cAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAACAGGTACAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAatt  >  2:254000/1‑140 (MQ=255)
                                                                                                                             cAGATCTTGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTAAAATATAAAAAGGTCCAACTGGCAGGTGTTACTTTCTCGATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAatt  <  1:143594/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                    
TAAAATTTCTGGTTTTCAATGGGCAATGACGATTTTCGTCTTCTTTGTCATTACAATGGCGTTATCCATTATGCTCAGAGATTTCCAGTCTATAATTGGTGTCAAACACTTTATATTTGAAGTTACAGATCTAGCACCATTAATTGCTGCAATCATTTGTATACTCGTTTTCAAATATAAAAAGGTCCAACTTGCAGGTTTAAAATTCTCAATCAGCCTGAAAGTAATTGAACGTCTATTGCTAGCTTTAATTTTACCTTTAATT  >  CP000730/2454494‑2454758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A