Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F174 I0 R1	55	81.0	1740380	95.7%	1665543	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,352,815	G→A	100%	A92V (GCA→GTA)	rpsI ←	ribosomal protein S9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,352,815	0	G	A	100.0%	217.1 / ‑6.5	74	A92V (GCA→GTA)	rpsI	ribosomal protein S9
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (36/37); minor base C (1/0); total (37/37)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAAAAT  >  CP000730/2352677‑2352951

atatCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACt                                                                                                                                        <  1:616240/141‑1 (MQ=255)

  accgcccGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTc                                                                                                                                      <  2:621469/136‑1 (MQ=255)

   tCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCt                                                                                                                                     >  1:79785/1‑141 (MQ=255)

    cGTCCGACAATTAACGTTTTGAGAATTGAGGTGGACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGTGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCta                                                                                                                                    <  2:481611/141‑1 (MQ=255)

          aCAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATg                                                                                                                              >  1:679126/1‑141 (MQ=255)

             aTTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCAc                                                                                                                           >  1:171663/1‑141 (MQ=255)

             aTTAACGTTTTGAGAATTGAAGTGAACGACGAGCTGCTTTAAGAGCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCAc                                                                                                                           >  2:471766/1‑141 (MQ=255)

              ttAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACg                                                                                                                          >  2:776355/1‑141 (MQ=255)

              ttAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTGATAGAACCTCTGTATTCAGGATCTACTTCTAATATTGCACg                                                                                                                          >  1:159483/1‑141 (MQ=255)

              ttAACGTTTTGAGAATTGAGGTGAACGACGAGATGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACg                                                                                                                          <  1:834992/141‑1 (MQ=255)

              ttAACGTTTTGAGAATCGAGGTGAACGACGAGCTGCTTTCAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACg                                                                                                                          <  1:222879/141‑1 (MQ=255)

                aaCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAg                                                                                                                        <  1:336714/141‑1 (MQ=255)

                 aCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTCCTTCTAATAATGCACGAGc                                                                                                                       >  1:330302/1‑141 (MQ=255)

                 aCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGc                                                                                                                       >  1:155847/1‑141 (MQ=255)

                 aCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGc                                                                                                                       >  2:661423/1‑141 (MQ=255)

                 aCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGCTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGATTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAgg                                                                                                                       >  2:459231/1‑140 (MQ=255)

                         agaATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGAGAATcctt                                                                                                               >  2:603199/1‑139 (MQ=255)

                          gaATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTGTCATACGTGGGGCACGAGTAAGTAATCCAGCGCGTTTTAAAGACCCTCTGTATTCAGGATCTACTTCTAATAATGAACGAGCGATTCCGTg                                                                                                              >  2:247514/1‑141 (MQ=39)

                          gaATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTATTTCATACGTGGGTAACGAGTCAGTAATCCAGCGCGCGTTAACGAACCTCTGTATTCAGTATCCACTTCTAATACTGCACTAGccacgcgtgc                                                                                                              >  2:129911/1‑132 (MQ=255)

                          gaAGTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTg                                                                                                              <  2:117910/141‑1 (MQ=255)

                             ttttggTGAACTACGAGCTGCGTGAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACg                                                                                                           <  2:139444/137‑1 (MQ=255)

                              tGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACgg                                                                                                          >  1:139325/1‑141 (MQ=255)

                              tGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACgg                                                                                                          >  1:731261/1‑141 (MQ=255)

                               gaagTGAACGACGAGCTGCTTTAAGCCCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGa                                                                                                         <  1:391206/138‑1 (MQ=255)

                               gAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGa                                                                                                         <  1:89935/141‑1 (MQ=255)

                               gAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGa                                                                                                         <  2:43920/141‑1 (MQ=255)

                                       cgacgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttga                                                                                                 <  2:755625/141‑1 (MQ=255)

                                       cgacgaGCTGCTTTAAGACCTGGTGTTTGACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTACGTGACGGCTatcttta                                                                                                 >  2:636630/1‑139 (MQ=255)

                                         acgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagc                                                                                               <  1:735948/141‑1 (MQ=255)

                                         acgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagc                                                                                               <  2:842654/141‑1 (MQ=255)

                                          cgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagct                                                                                              >  2:661917/1‑141 (MQ=255)

                                           gaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagctt                                                                                             >  1:714488/1‑141 (MQ=255)

                                                  tttAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGt                                                                                      <  2:24017/141‑1 (MQ=255)

                                                    tAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGa                                                                                    <  1:502034/141‑1 (MQ=255)

                                                          cTGGTTTTTTACGTTCTTTCATACGTGGGTCACGCGTAAGTAATCCAGCGCGTTTTAAAGTACCTCTGTATTCATGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCTCGTGCAaccgc                                                                              >  2:12028/1‑139 (MQ=255)

                                                          cTGGTTTTTTACGTTCTTTCATACGTGGATCACGAGTAAGTAATCCAGCGCGTTGTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccac                                                                              >  1:558710/1‑141 (MQ=255)

                                                            ggTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccacca                                                                            <  1:108458/141‑1 (MQ=255)

                                                               ttattACGTTTTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAAGCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGTGCTTGTCCAGTGAAAccaccacca                                                                         >  2:314885/4‑141 (MQ=255)

                                                                  ttACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATGCCGTGACGGATAGCTTGAGCTTGTCAAGTGACACCACCACCAtaa                                                                      >  2:10114/1‑139 (MQ=255)

                                                                  cgaCGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTAAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGACCGATTCCGTGACGGAGAGCTTGAGCTGGTCCAGTGAAACCACCACCATGa                                                                      >  2:436235/3‑141 (MQ=255)

                                                                    aCGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAAc                                                                    >  2:488202/1‑141 (MQ=255)

                                                                           ttCATACGTGGGTCACGAGTAAGTAATCCATCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGCGACGGATAGCCTGACCCTGTCCAGTGAATCCACCACCATGAACGTTAACt                                                             <  2:636529/141‑1 (MQ=255)

                                                                            tCATACGTGGGTCACGAGTAAGTAATCCGGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTCGTCCAGTGAAACCACCACCATGAACGTGAACTa                                                            >  2:834787/1‑141 (MQ=255)

                                                                            tCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTa                                                            >  2:685386/1‑141 (MQ=255)

                                                                             cATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTaa                                                           <  1:516042/141‑1 (MQ=255)

                                                                                aCGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAc                                                        <  1:730871/141‑1 (MQ=255)

                                                                                  gTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcat                                                      <  1:696203/141‑1 (MQ=255)

                                                                                   tGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGTGCTTGTCCAGTGAAACCACCACCATGAACTTTAACTAAAAcatc                                                     <  1:471766/141‑1 (MQ=255)

                                                                                    gggTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcctca                                                    >  2:82558/1‑141 (MQ=255)

                                                                                     ggTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcatcat                                                   <  2:139325/141‑1 (MQ=255)

                                                                                     ggTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcatcat                                                   <  2:731261/141‑1 (MQ=255)

                                                                                       tCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAg                                                 <  1:661423/141‑1 (MQ=255)

                                                                                          cGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATACTGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCACAGTTa                                              >  2:65644/1‑141 (MQ=255)

                                                                                            agtaagtaATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATAATAGTTTcc                                            >  2:711148/1‑141 (MQ=255)

                                                                                             gtaagcaaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCt                                           <  2:96077/141‑1 (MQ=255)

                                                                                                  taaTCCCGCGCGTTTTAAAGAATCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTCACTAATACTTCATAGTTACCTTTAGt                                      <  2:479610/141‑1 (MQ=255)

                                                                                                   aaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCACTGAAACCACCACCATGAACGTCAAATATAAAAACATAGCACCCTCTAGtt                                     >  2:783689/1‑141 (MQ=255)

                                                                                                           gcgTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTAc                             >  1:352424/1‑141 (MQ=255)

                                                                                                             gTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACAt                           <  1:661917/141‑1 (MQ=255)

                                                                                                             gTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTCTAGTTTCAGTTACAt                           <  1:642723/141‑1 (MQ=255)

                                                                                                                 tAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATaaaa                       >  1:537964/1‑141 (MQ=255)

                                                                                                                    aGAACTTATGTATTCACGATCCATGTCTTATAATGCACGAGCGATTCCGTGACGGATAGTTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                    <  1:194258/141‑1 (MQ=255)

                                                                                                                    aGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                    <  1:838264/141‑1 (MQ=255)

                                                                                                                     gAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtggt                   <  2:171663/141‑1 (MQ=255)

                                                                                                                       aCCTCTGTATGCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtggttg                 <  1:247514/141‑1 (MQ=255)

                                                                                                                        ccTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtggtggg                >  2:444157/1‑141 (MQ=255)

                                                                                                                          tctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATggttggtt              >  2:803767/1‑141 (MQ=255)

                                                                                                                              gaTTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAg          <  1:2274/140‑1 (MQ=255)

                                                                                                                               aTTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCGGTTACATCAGATGGTTGGTTTAAGt         >  2:715935/1‑141 (MQ=255)

                                                                                                                                 tCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCt       <  1:150747/141‑1 (MQ=255)

                                                                                                                                  cAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTACCTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTAGTTTAAGTCTa      >  2:79852/1‑141 (MQ=255)

                                                                                                                                   aGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCATATGGTTGGTTTAAGTCTaa     <  1:459231/141‑1 (MQ=255)

                                                                                                                                   aGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTaa     <  2:155847/141‑1 (MQ=255)

                                                                                                                                      aTCTACTTCTAATAACGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATGGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAAAAt  >  1:642994/1‑141 (MQ=255)

ATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAAAAT  >  CP000730/2352677‑2352951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A