Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F184 I0 R1	46	69.8	1527574	94.8%	1448140	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,352,815	G→A	100%	A92V (GCA→GTA)	rpsI ←	ribosomal protein S9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,352,815	0	G	A	100.0%	260.1 / ‑6.5	91	A92V (GCA→GTA)	rpsI	ribosomal protein S9
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (51/38); minor base C (2/0); total (53/38)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAA  >  CP000730/2352680‑2352948

tCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGACCTCCTTc                                                                                                                                   >  2:292021/1‑140 (MQ=255)

  gTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAACGCACCTCTGTATTCAGGATCTACTTCta                                                                                                                                 >  2:53676/1‑140 (MQ=255)

     cGACAATTACCGTTTTGAGAATTGAGGTTAACGACGAGCTGCTTTAAGCCCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCtaata                                                                                                                              <  2:606314/140‑1 (MQ=255)

      gACAATTAACGTTTTGAGAATTGAGGCGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCtaataa                                                                                                                             >  2:473207/1‑140 (MQ=255)

       aCAATTAACGTTTTGAGAATTGAGGTGAACTACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTaataat                                                                                                                            <  1:212614/140‑1 (MQ=255)

       aCAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTaataat                                                                                                                            <  1:614852/140‑1 (MQ=255)

       aCAATTAACGATATGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTaataat                                                                                                                            >  2:618281/1‑140 (MQ=255)

        cAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATAAGTGGGTCACGAGTACGTAATCCAGCGCGTTTTAAAGAACCACTGAGGTGAACATCTCCTCCTAATAATg                                                                                                                           >  2:375338/1‑140 (MQ=25)

        cAATGAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAAGATGTACTTCtaataaat                                                                                                                           >  1:340903/1‑138 (MQ=38)

         aaTTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATATACTTCTAATAATGc                                                                                                                          >  2:702781/1‑140 (MQ=255)

             aaCGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGa                                                                                                                      <  1:564063/140‑1 (MQ=255)

              aCGTTTTGAGAATTGAGGTGAACGTCGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAg                                                                                                                     <  1:723656/140‑1 (MQ=255)

              aCGTTTTGAGAATTGAGGTGAACGACGAGCTTCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTTACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAg                                                                                                                     <  1:521091/140‑1 (MQ=255)

               cGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACTTCTGTATTCGGGATCTACTTCTAATACTGCAcagac                                                                                                                    >  2:113999/1‑136 (MQ=39)

               cGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGc                                                                                                                    >  1:750031/1‑140 (MQ=255)

                gTTTTGAGAATTGAGGTGAACGCCGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGGGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCg                                                                                                                   <  1:711420/140‑1 (MQ=255)

                  tttGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTATTTCATCTGTGGGTAACGAGTCAGTAATGCAGCGCGTTTTAAAGAACCTCAGTATACAGGATCTACTGCTAATAATGAACGAGCGAt                                                                                                                 >  2:633519/1‑140 (MQ=37)

                       taaTTGAGGTGAACGACGGGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCAGTATTCAGGATCTACTTCTAATAATGCACGATCGATTCCGt                                                                                                            <  1:520958/139‑1 (MQ=255)

                           tGAGGTGAACGACGAGCTGCTTTAAGTCTTTGTTTTTTTCGTTCTTTCATAAGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACg                                                                                                        <  1:353811/140‑1 (MQ=255)

                            gAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACgg                                                                                                       <  1:651055/140‑1 (MQ=255)

                                 gAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagc                                                                                                  >  2:557532/1‑140 (MQ=255)

                                     gacgaGCTGCTTTAAGACCTGGTTTTTTTTTTTTTTTTATACGTGGGTCACGAGTAAGTAATCCATCGCGTTTTAAAGAACCTCTGTATTCTTGATCTACTTCTAATTATGCCCGAGCGATTCCGTGACGGATagcgtga                                                                                              >  2:448755/1‑140 (MQ=255)

                                       cgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagc                                                                                            <  1:263426/140‑1 (MQ=255)

                                       cgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagc                                                                                            <  1:657411/140‑1 (MQ=255)

                                       cgaGCTGCTTCAAGGCCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagc                                                                                            <  1:242253/140‑1 (MQ=255)

                                             gctTCAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGCAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTACTAATGTACGAGCGATTCCGTGACGGATTGCTTGAGCTTGTcc                                                                                      >  1:535616/1‑140 (MQ=255)

                                                ttataaCCTTGTTTTTTACGTTCTTTCATTCGTTGGTCACGAGTAAGTAATCCAGTGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGt                                                                                   <  1:106259/135‑1 (MQ=255)

                                                ttAAGACCTTGTTGTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGt                                                                                   <  1:92460/140‑1 (MQ=255)

                                                 tAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTg                                                                                  <  2:376942/140‑1 (MQ=255)

                                                   aGACCTGGTTTTTTACGTTCTTTCATACGTGGGTGAAGAGTAAGTCCTTCAACGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATTATAGCTGAGCGATTCCGCGACGGATagcttgagctttcgcagtaga                                                                                >  2:613497/1‑130 (MQ=255)

                                                   aGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGaa                                                                                >  1:546276/1‑140 (MQ=255)

                                                         ggTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGATCCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccacc                                                                          <  1:382244/140‑1 (MQ=255)

                                                         ggTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccacc                                                                          <  1:345637/140‑1 (MQ=255)

                                                         ggTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccacc                                                                          <  1:499994/140‑1 (MQ=255)

                                                         ggTTTTTGACGTTCTGTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccacc                                                                          <  2:213204/140‑1 (MQ=255)

                                                            tttttACGTTCTTTAATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAacaaccacc                                                                       >  1:406925/1‑140 (MQ=255)

                                                             ttttgctgtttttGATACGTGAGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATTGCTTGAGGTTGTCCGGTGGAAccaccacca                                                                      >  2:560090/11‑140 (MQ=255)

                                                             ttttCCGTTGTTTCATACGTGGGTCCCGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAAccaccacca                                                                      <  2:342856/140‑1 (MQ=255)

                                                             ttttACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAAccaccacca                                                                      >  1:564329/1‑140 (MQ=255)

                                                              tttACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCAt                                                                     >  2:298210/1‑140 (MQ=255)

                                                              tttACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATCCAGGATCTACTTCTAATAATGCACGGGGGATTCGTTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCAt                                                                     >  2:691292/1‑140 (MQ=255)

                                                               ttcctttCTTTCATACGGTGGTCACGAGTAATTAATACAGCGCTTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAACGCACGAGCGATTCCGTGACGGATAGCTTGATCTTGTCCAGTGAAACCACCACCATg                                                                    <  1:42634/135‑1 (MQ=255)

                                                               ttACGTTCTTTCATTCGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTCTTCGTCCTGGGTATTCAGGATCTACTTCTAAGAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATg                                                                    <  1:712973/140‑1 (MQ=255)

                                                                 aCGTTCTTTCATACGTGGGTCAAGACTAAGTAATCCAGCGCGTTTTAAAGAGCCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGaa                                                                  >  2:539144/1‑140 (MQ=255)

                                                                        ttCATGCGTGGGTCACGAGTAAGTAATCCAGTGCGTTTTAAAGAACCTCTGCATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAAc                                                           <  1:42930/140‑1 (MQ=255)

                                                                         tCATACTTGTGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACt                                                          >  2:755312/1‑140 (MQ=255)

                                                                          cacaCGTGGGTCACGAGTAAGTAATCCAGCTCGTTGTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACCAGCGATTCCGTGACGGATAGCTTGATCTTGTTCAGTGAAACCACTACCATGAAAGTTAAGTa                                                         <  2:90122/137‑1 (MQ=255)

                                                                            tACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTaaa                                                       >  1:33721/1‑140 (MQ=255)

                                                                              cGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAGCCACCACCATGAACGTTAACTAAAAc                                                     >  1:3186/1‑140 (MQ=255)

                                                                                tGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcat                                                   >  1:220185/1‑140 (MQ=255)

                                                                                tGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACAATGAACGTTAACTAAAActt                                                   >  1:733365/1‑138 (MQ=255)

                                                                                   gTCACGAGTAAGTAATCCAGCGCGTTTTTAACAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcataat                                                >  1:180760/1‑140 (MQ=255)

                                                                                   gTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcatcat                                                >  2:242908/1‑140 (MQ=255)

                                                                                   gTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTACAGTGCAACCACCACCATGAACGCTAACTAAAAcatcat                                                >  2:242757/1‑140 (MQ=255)

                                                                                   gTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTCACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcatcat                                                >  1:3445/1‑140 (MQ=255)

                                                                                      aCGAGTAAGTAATCCAGCGCGTTTTAAAGAACCCCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTCTCCAGTGAAACCACCACCATGAACGTCAACTAAAACATCATAGt                                             <  2:586590/140‑1 (MQ=255)

                                                                                       cGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGCTAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGtt                                            >  2:625475/1‑140 (MQ=255)

                                                                                       cGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAACCATCATAGtt                                            >  2:115039/1‑140 (MQ=255)

                                                                                       cGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATATACTTCTAATAATGCACGAGCGATTCCGTGACGGAGAGCTTGAGCTTATCCAGTGAAACCACCACCCTGAAGGTTAACTAAAAAATCATAGtt                                            >  2:713296/1‑140 (MQ=255)

                                                                                          gtaagtaaTCCAGTGTGTTTTAAAGGAACTCTGTATTAAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTAcc                                         <  1:343780/140‑1 (MQ=255)

                                                                                                aaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGt                                   <  1:557532/140‑1 (MQ=255)

                                                                                                aaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGt                                   >  1:51663/1‑140 (MQ=255)

                                                                                                aaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGt                                   <  1:383865/140‑1 (MQ=255)

                                                                                                 aTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGACCGTTAACTAAAACATCATACTTACCTTTAgct                                  >  2:385350/1‑138 (MQ=255)

                                                                                                 aTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGtt                                  >  2:241930/1‑140 (MQ=255)

                                                                                                 aTCCAGCGCGTTTTAAAGAACATGTTTATTCAGACTCTAATTATACTAATGCAGGAGCGGTTAAGTGACCGGTAGCTTGAACTTGTACAGTTCAACCCCCACCATGAACACTACATGCAACATCATAGCTActtcttgtc                                  >  2:702407/1‑132 (MQ=255)

                                                                                                   ccAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGACCTTGTCCAGTGAAACCACCACCATGAACGTTAAATAAAACAACATAGTTACCTTTAGTTTc                                >  1:267987/1‑140 (MQ=255)

                                                                                                   ccAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATCCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCTTGAACGTTAACTAAAACATCATAGTTACCGTTAGTTTc                                >  2:524770/1‑140 (MQ=255)

                                                                                                            tttAAAGCACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATCGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATc                       <  1:512427/140‑1 (MQ=255)

                                                                                                            tttAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAACACATCATAGTTACCTTTAGTTTCAGTTACATc                       <  1:544879/140‑1 (MQ=255)

                                                                                                            tttAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCAACACCATGAACGTTAACTAAAACATCATAGTCACTTTTAATTTAAGTTGCact                       >  1:101963/1‑138 (MQ=255)

                                                                                                             ttAAAGACCCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTACCTAAAACATCATAGTTACTTTAAGTTTCAGTTACATCa                      <  1:423852/140‑1 (MQ=255)

                                                                                                                aaGAACCTCTGTATTGAAGGTTTACTTACAATAATGCACGCGCGAGTCCGTGTCGGATAGATTGAGACTGTTAAGTAAAATAACCAGCTTGGACGTTAACTAAAAGATCACAGTGACCTTTAGTTTCAGTTACAttatct                   <  2:189777/140‑6 (MQ=255)

                                                                                                                aaGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGCCGGATAACTTGAGCTGGTCCAGTGAAACCACCACCATGAACGGTAACTAAAACATCATCGTTCCCTTTAATGTCAGTTACATTAAAt                   >  2:452375/1‑140 (MQ=255)

                                                                                                                aaGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCCGTTACATaaaag                   >  2:640866/1‑139 (MQ=255)

                                                                                                                aaGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAt                   <  2:546276/140‑1 (MQ=255)

                                                                                                                  gcaCCTCTTTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCTTGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                 <  1:400540/138‑1 (MQ=255)

                                                                                                                  gAACCTCTGTATTCAGTATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                 <  2:339441/140‑1 (MQ=255)

                                                                                                                  gAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCGAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                 >  1:629885/1‑140 (MQ=255)

                                                                                                                  gAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCCAAtgg                 >  2:751271/1‑140 (MQ=255)

                                                                                                                  gAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtgg                 >  1:111742/1‑140 (MQ=255)

                                                                                                                  gAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTCTAGTTTCAGTTACATCAAAtgg                 >  1:458742/1‑140 (MQ=255)

                                                                                                                     ccTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAGACTACCACCATGAACGGTAACTAAAACATCATAGTTCGCTTTAGGTTCAGTTACAGAAGAtggttg              >  2:550165/1‑140 (MQ=255)

                                                                                                                       tctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTCACATCAAAtggttggt            >  2:2468/1‑140 (MQ=255)

                                                                                                                        ctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATgattggtt           >  2:97895/1‑140 (MQ=255)

                                                                                                                        ctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTAAGTTTCAGTTACATCAAATggatggtt           >  1:317138/1‑140 (MQ=255)

                                                                                                                           tATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTaa        <  2:680705/140‑1 (MQ=255)

                                                                                                                           tATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACACATTAGTTACCTTTAGTGTCAGTTACATCCAATGGTTGGGTTaa        >  2:389371/1‑140 (MQ=255)

                                                                                                                            aTTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCGGTTACAACAAATGGTTGGTTAAAg       >  2:226955/1‑140 (MQ=255)

                                                                                                                            aTTCAGGATCTACTGCTAATACTTCCTAAGCGATTCCGTGCCAGACAGATTCATCTTGTCCAGTTAACCCAACAACATGAACGTTAACTAAAACATCATAGTAACATTTAGCTTAACTTACAACAAATGGCTGGCTTAAg       <  2:190659/140‑1 (MQ=255)

                                                                                                                                 ggATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTACAGTTACATCAAATGGTTGGTATAAGTCTaa  >  1:673109/1‑140 (MQ=255)

TCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAA  >  CP000730/2352680‑2352948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A