Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F67 I0 R1	54	74.6	1619566	95.7%	1549924	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,963,768	C→G	100%	V365L (GTA→CTA)	hemG ←	protoporphyrinogen oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,963,768	0	C	G	100.0%	290.6 / NA	86	V365L (GTA→CTA)	hemG	protoporphyrinogen oxidase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (44/42); total (44/42)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TACTTTTCGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTACATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGTCTT  >  CP000730/1963630‑1963905

tACTTTTCGGCAAACGATTGACAATTGTAAATTCAGGATCACCGTTAAATGCCATCATTTGACTTAAATCTCTACTTACTATCGATACTAACTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGAt                                                                                                                                          <  2:263878/141‑1 (MQ=255)

 aCTTTTCGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATa                                                                                                                                         >  2:311815/1‑141 (MQ=255)

       cgtaaaaCGCTTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAACCGATACTAATTCATTATCTGTATGCTCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  2:96586/137‑1 (MQ=255)

       cGGTAAACGATTGACAATTTTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  2:98247/141‑1 (MQ=255)

       cGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCCCg                                                                                                                                   >  1:687573/1‑141 (MQ=255)

       cGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  1:699453/141‑1 (MQ=255)

       cGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  1:730063/141‑1 (MQ=255)

       cGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  2:740234/141‑1 (MQ=255)

       cGGCAAACGATTGACAATTGTAAATTCAGGAGCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCCATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACg                                                                                                                                   <  1:328897/141‑1 (MQ=255)

             aCGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCaa                                                                                                                             >  1:668444/1‑141 (MQ=255)

               gATTGACAATTGTAAATTCAGGATCACCCTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCaaaa                                                                                                                           <  1:480670/141‑1 (MQ=255)

                  tGACAATTGTGAATTCAGGAGCACCGTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTCGATACGCACGAATCAAAacct                                                                                                                        >  2:393124/1‑141 (MQ=255)

                  tGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAacct                                                                                                                        >  1:711295/1‑141 (MQ=255)

                  tGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATAATCTCTATGATCATCAACCACAGAATCACCTGGTTTACCTAGATACGCACGAATCAAAccct                                                                                                                        >  2:287529/1‑141 (MQ=255)

                    gtgaTTGTATATTCAGGAGCACCGTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAacctta                                                                                                                      <  2:601381/138‑1 (MQ=255)

                    aCAATTTTAAATTCATGATCACCTTTAAATGTCATTATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCGAGCGCAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAacctta                                                                                                                      <  2:694534/141‑1 (MQ=255)

                    aCAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAacctta                                                                                                                      <  2:456774/141‑1 (MQ=255)

                        ttGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAaccttacctt                                                                                                                  <  1:509845/141‑1 (MQ=255)

                             aaTTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATGCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAAACTTACCTTCCGgt                                                                                                             >  1:782677/1‑141 (MQ=255)

                                 cAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACTAAACTACCCATAGGTTTACCTCGCTACGAGAAAATCAAAAACTTACATTGCGGTgtag                                                                                                         >  1:183749/1‑141 (MQ=255)

                                      ttagcTTTAAATGGCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGCATCTAAACCTTACCTTCCGGTGTAGTAAAt                                                                                                    <  2:173428/137‑1 (MQ=255)

                                      tCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAAt                                                                                                    <  1:475667/141‑1 (MQ=255)

                                             tAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTAGGATCATCAACCACAGTATCACCTGGGTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGGGTAGAAAAGGGACAtt                                                                                             >  1:256405/1‑141 (MQ=255)

                                                aTGTCGTCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCAttttt                                                                                          <  1:702845/141‑1 (MQ=255)

                                                aTGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCAttttt                                                                                          <  1:266779/141‑1 (MQ=255)

                                                  ttcatcaTTTGACTGAAATCTCTACGTAAAATCGATACTAATTCATTATCTGTATGACCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTc                                                                                        <  2:417433/140‑1 (MQ=255)

                                                  gTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTc                                                                                        <  1:445412/141‑1 (MQ=255)

                                                  gTCAGCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTc                                                                                        <  1:225591/141‑1 (MQ=255)

                                                               ttAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCCACCAAAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTGTCGATGTCCAAGTAc                                                                           >  1:68723/1‑141 (MQ=255)

                                                                 aaaTCTCTTCGTACAATCGATTCTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACAt                                                                         <  1:335543/141‑1 (MQ=255)

                                                                 aaaTCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACAt                                                                         >  2:722113/1‑141 (MQ=255)

                                                                  aaTCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATg                                                                        >  1:444562/1‑141 (MQ=255)

                                                                  aaTCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTAGATGTCCAAGTACATg                                                                        <  2:800292/141‑1 (MQ=255)

                                                                        caCGTACAATCGATACTAATTCATTATCTGCATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTaa                                                                  <  1:495432/140‑1 (MQ=255)

                                                                           gTACCATCGATACTAATTCATTATCTGTATGAGCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGCACATGCGGTAATGt                                                               <  2:549296/141‑1 (MQ=255)

                                                                           gTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGt                                                               >  1:169055/1‑141 (MQ=255)

                                                                           gTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGt                                                               <  2:187880/141‑1 (MQ=255)

                                                                           gTACAATCGATACTAATTCAGTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAAGCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGt                                                               <  2:417382/141‑1 (MQ=255)

                                                                             acacTCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCt                                                             >  2:496370/1‑141 (MQ=255)

                                                                             aCAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTGCATGCGGTAATGTCt                                                             >  1:324822/1‑141 (MQ=255)

                                                                             aCAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAACTACATGCGGTAATGTCt                                                             >  2:786116/1‑141 (MQ=255)

                                                                                aTCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTa                                                          >  1:144455/1‑141 (MQ=255)

                                                                                 tCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTATACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCTTTTTTTAATTACATGCGGTAATGTCTGTAt                                                         >  2:595408/1‑141 (MQ=255)

                                                                                   gctACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATTCTCACGAATCAAAACCTTACCTTCCGGTATATTAACTCGCCATTTTTTTGATTTCCAAGTACATTCGGTAGTGTCTGTATCa                                                       >  2:316345/3‑141 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       >  2:629524/1‑141 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       >  2:682048/1‑141 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       <  2:407233/141‑1 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       >  1:687626/1‑141 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       >  2:502463/1‑141 (MQ=255)

                                                                                   gATACTAATTCATTATCTGTATGATCATCAACCACAGTAGCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATcc                                                       >  2:68687/1‑140 (MQ=255)

                                                                                   caTACTAATTCACTATCTGTATGATCATCAACCACATTATCACCTGGTTTACCTAGATACGGACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCa                                                       <  2:44565/140‑1 (MQ=255)

                                                                                       ttcattcattcTCTGTATGATCATCAACCACAGTATCACCTGGTTTCCCTAGATCCGCACGACTCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCg                                                  <  1:397714/138‑1 (MQ=255)

                                                                                       gtAATTCATTCTCTGTATTATCATCAACCACAGTATCCCCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCg                                                  <  1:397762/140‑1 (MQ=255)

                                                                                       cTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCg                                                  >  1:282758/1‑141 (MQ=255)

                                                                                        tAATTCCTTATCTGTATGACCAGCAACCACAGTATCACCTTTTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCTATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGt                                                 <  2:21944/141‑1 (MQ=255)

                                                                                        aaaatCATTATCTGTATGATCATCAACCACAGAATCAACTCGTTTACATAGATCCACACGAATAAAAACCTTACCTTCGTGTGTAGTATATTGCCAGTTTTCCGGTCGTTTAGTCCATGCGGTAATGTCTGAATCA‑CTCGt                                                 <  2:775533/137‑1 (MQ=255)

                                                                                              aTTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGc                                           <  2:24782/141‑1 (MQ=255)

                                                                                               ttATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGACACGCACGAATCGAAACCTTACCTTCCGATGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATTCGGTAATGTCTGTATCA‑CTCGTTCTCGCa                                          >  1:321127/1‑141 (MQ=255)

                                                                                                tATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCaa                                         <  1:478170/141‑1 (MQ=255)

                                                                                                tATCTGGATGATCATCAACCACAGTATCACCTGGTTTACCTAGACACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATTGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCaa                                         <  1:38272/141‑1 (MQ=255)

                                                                                                 aTCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCC‑CTCGTTCTCGCAAt                                        >  2:417997/1‑141 (MQ=255)

                                                                                                    tGTATGATCACCAACCACGGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGGACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTAc                                     <  2:1022/141‑1 (MQ=255)

                                                                                                       aTGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCC‑CTCGTTCTCGCAATTACGaa                                  >  2:7038/1‑141 (MQ=255)

                                                                                                       aTGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGaa                                  <  1:740909/141‑1 (MQ=255)

                                                                                                       aTGATCATCAACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGaa                                  >  2:688441/1‑141 (MQ=255)

                                                                                                            catcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCC‑CCCGTTCTCGCAATTACGAAGCCAg                             >  2:12789/1‑141 (MQ=255)

                                                                                                            catcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAg                             >  2:761790/1‑141 (MQ=255)

                                                                                                            catcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTAGCA‑CTCGTTCTCGCAATTACGAGGCCAg                             >  1:339918/1‑141 (MQ=255)

                                                                                                            cagcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGT‑TCATATCTTGCTCGCAATTACGAAGCCAg                             <  1:595408/138‑1 (MQ=255)

                                                                                                             atcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGt                            >  2:720488/1‑141 (MQ=255)

                                                                                                              tcaACCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTa                           >  1:636978/1‑141 (MQ=255)

                                                                                                                aaCCACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTAcc                         >  2:794186/1‑141 (MQ=255)

                                                                                                                  ccACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCTTTGTTTATTTACATGCGGAAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACcat                       >  2:539103/1‑141 (MQ=255)

                                                                                                                  ccACAGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACcat                       >  2:679287/1‑141 (MQ=255)

                                                                                                                   cacaGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACcatc                      <  1:776807/141‑1 (MQ=255)

                                                                                                                      aGTATCACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATg                   <  2:441693/141‑1 (MQ=255)

                                                                                                                           cACCTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑TTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTAt              <  1:429109/141‑1 (MQ=255)

                                                                                                                             ccTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACcatccagggaaata            >  1:277930/1‑131 (MQ=255)

                                                                                                                             ccTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CCCGTTCTCGCAATTACGAAGCCAGTACCACCATGGGCAttt            >  2:21779/1‑141 (MQ=255)

                                                                                                                             ccTGGTTTACCTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTATGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTGttt            >  2:93789/1‑141 (MQ=255)

                                                                                                                                    tACCTAGATACTCACGAAGCAAAACCTTACCTTCCGTTATTGTAAATTGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATGA‑ATCGTTGCCGGAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGt     <  2:333065/141‑1 (MQ=255)

                                                                                                                                    tACCTAGATACGCCCGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGt     <  2:68246/141‑1 (MQ=255)

                                                                                                                                      ccTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTTTTTTTTCAATTACATGCGGTAAGGTCTGTATCA‑CTCGTTCTCGCAATTACAAAGCCAGTACAATCATTGGTATTTTCAAttgct   >  2:618920/1‑137 (MQ=255)

                                                                                                                                      ccTAGATACGCACGAATCAAAACCTTACCTGCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGTCt   >  1:239888/1‑141 (MQ=255)

                                                                                                                                      ccTAGATACGCACGAATCAAAACATTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGCAGCCAGTACCATCATGGGTATTTTCAATGTCt   >  2:319656/1‑141 (MQ=255)

                                                                                                                                       cTAGATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGTCtt  >  2:85829/1‑141 (MQ=255)

TACTTTTCGGCAAACGATTGACAATTGTAAATTCAGGATCACCTTTAAATGTCATCATTTGACTTAAATCTCTACGTACAATCGATACTAATTCATTATCTGTATGATCATCAACCACAGTATCACCTGGTTTACCTACATACGCACGAATCAAAACCTTACCTTCCGGTGTAGTAAATGGCCATTTTTTCGATGTCCAAGTACATGCGGTAATGTCTGTATCA‑CTCGTTCTCGCAATTACGAAGCCAGTACCATCATGGGTATTTTCAATGTCTT  >  CP000730/1963630‑1963905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A