Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F18 I0 R1
|
80 |
28.1 |
641476 |
93.5% |
599780 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP000730 |
479,553 |
G→A |
100% |
A194T (GCA→ACA) |
USA300HOU_0458 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 479,553 | 0 | G | A | 100.0%
| 88.6
/ ‑6.5
| 29 | A194T (GCA→ACA) | USA300HOU_0458 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (22/6); minor base C (1/0); total (23/6) |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGATGCAATAATAGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATGCATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGAAATGACGATAGAGTCAGTATTAACTCATTTTTCAATAG > CP000730/479417‑479673
|
tGATGCAATAATAGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACcatacat < 1:55756/140‑1 (MQ=255)
tGCAATAATAGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGt < 1:134292/140‑1 (MQ=255)
tGCAATAATAGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAACGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGt < 1:74532/140‑1 (MQ=255)
aataGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCAtt > 2:56907/1‑140 (MQ=255)
aGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAg > 1:54577/1‑140 (MQ=255)
gATGAACAAGTTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAgc < 1:18908/140‑1 (MQ=255)
ggTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAGTTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGa > 2:10026/1‑140 (MQ=255)
aGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGACACTTTATATCGATCAATTTCTATCTAGTTGGACAATGCCGAAGCGTGAGCAACGTTTTTACCATACATGGTTGCATTTAACG‑CAACATGACCAt > 1:188807/1‑140 (MQ=255)
cACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑t > 1:78032/1‑140 (MQ=255)
cTTAGCGAACAAGTGACTCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑ttt > 1:302539/1‑140 (MQ=255)
cTTAGCGAACAAGTGAATCGTCAAATGATTAACTGGACGAAACTTTATATCGCTCAATTCCTATAGAGTTGCACAATGCGGAAGAACTACCTATGGTTTTACCATACATGGTTGCGTTTAGCG‑CAACATGACCATAG‑ttt > 1:60827/1‑140 (MQ=255)
cTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑ttt > 1:310975/1‑140 (MQ=255)
agcGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAgcgc < 1:92601/138‑1 (MQ=255)
aTCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAgcgc > 1:173419/1‑140 (MQ=255)
ttAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTaaa < 1:15380/140‑1 (MQ=255)
aTGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCt > 2:250440/1‑140 (MQ=255)
gACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTAc > 1:187086/1‑140 (MQ=255)
aaCTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGCCCATAG‑TTTTACTAAAGCACAGCGCCAGATGATTAAAGGCTTACCCAAt > 2:70683/1‑140 (MQ=255)
tttATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATGTAGCG‑CAACATGACCATAG‑TTTTACTAGAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGAt > 2:196924/1‑140 (MQ=255)
tatCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATGAAAGGCTTACCCAATGATCCTg > 2:171761/1‑140 (MQ=255)
tCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTCCCCAATGATCCTGaa > 2:8732/1‑140 (MQ=255)
tCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGaa > 2:77038/1‑140 (MQ=255)
tttCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATCGATGTGCACATGTGGCGTCAGGAT‑TCC‑TAGTTTTTACTAAAGCACAGCGCCAAGTGACTAAATGCTTACCCAGTGATCCTGAACTGGCGAt > 1:153791/1‑140 (MQ=255)
tttCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCGTAG‑CCCTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGACCCTGAAATGACGAt > 1:74026/1‑140 (MQ=255)
tttCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGAAATGACGAt > 1:259974/1‑140 (MQ=255)
tttCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGAAATGACGAt > 1:138658/1‑140 (MQ=255)
tttCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAAGATTACCCAATGAAACTGAAATGACGAt > 1:96937/1‑140 (MQ=255)
gAAGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑AAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGAAATGACGATAGAGTCAGTATTAACTCAttttt < 1:10026/140‑1 (MQ=255)
aaGCGTGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCACTGATCCTGAAATGACGATAGAGTCAGTATTAACTCATTTTTc > 2:206136/1‑140 (MQ=255)
tGAGCAAAGTTTTTACCATACATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCCCAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGACATGCCGATGGCGTCAGTATTAACTCATTTTTCCAtcg > 1:224250/1‑138 (MQ=255)
|
TGATGCAATAATAGATGAACAAGGTGAGCCACTTAGCGAACAAGTGAATCGTCAAATGATTAAATGGACGAAACTTTATATCGATCAATTTCTATCGAGTTGGACAATGCCGAAGCGTGAGCAAAGTTTTTACCATGCATGGTTGCATTTAGCG‑CAACATGACCATAG‑TTTTACTAAAGCACAGCGCCAAGTGATTAAAGGCTTACCCAATGATCCTGAAATGACGATAGAGTCAGTATTAACTCATTTTTCAATAG > CP000730/479417‑479673
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
