Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F57 I1 R1
|
25 |
173.1 |
3446910 |
97.6% |
3364184 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
632,405 |
T→G |
I177S (ATT→AGT) |
proP → |
MFS family major facilitator transporter, proline/betaine:cation symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 632,405 | 0 | T | G | 99.0%
| 677.9
/ NA
| 197 | I177S (ATT→AGT) | proP | MFS family major facilitator transporter, proline/betaine:cation symporter |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base G (110/84); total (111/86) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 197 total aligned reads displayed.
GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > CP000730/632260‑632550
|
gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 2:129243/149‑1 (MQ=255)
gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 1:1017364/149‑1 (MQ=255)
gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 2:588372/149‑1 (MQ=255)
gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 1:607284/149‑1 (MQ=255)
tactacAAGGGTTTCCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCt < 1:1581399/149‑1 (MQ=255)
actacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTg > 2:1338781/1‑149 (MQ=255)
tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCGGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCGCTGAGGAGTGCTGTa > 1:718759/1‑149 (MQ=255)
tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTa > 1:490712/1‑149 (MQ=255)
tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTa > 2:832275/1‑149 (MQ=255)
acAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTAt > 2:170390/1‑149 (MQ=255)
aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGACTCATCTACAGAGAAGCGCCGTCTCATGTAAGTTAGTGGACTAGAGGTAGGGACCAATTCAGGTTACATGGCTG‑CTTCGATTATGAGTGCTGTATTa > 1:1694644/1‑149 (MQ=255)
aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTa > 1:416110/1‑149 (MQ=255)
aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGTAATGTGGCCCTTATC‑GACCACCACGCCGCCTTCAAGTATGAGTGCTGTATTaa > 1:654521/1‑149 (MQ=255)
aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa > 2:1545523/1‑149 (MQ=255)
aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa < 1:621665/149‑1 (MQ=255)
aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa > 1:470094/1‑149 (MQ=255)
tttCAACAGGTGGAGAGAATGCGGGAGCAATGACATATGTTGCCGAATCATATCCAGATAAGCGTCGTAACTCATTAGGTAGTGGAATAGAAATTGCGACATTATCAGGTTACATAGCTG‑CTTCATGAATGCTTGCCGTATCaagcttc > 2:1417315/1‑144 (MQ=255)
ttCAACAGGTGGAGGGTATGCGGGGGCAATGACATATGTTGCCGAATCACCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGCTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCt < 2:889492/149‑1 (MQ=255)
ttCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCt < 2:329239/149‑1 (MQ=255)
tCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtt < 1:1539954/149‑1 (MQ=255)
cAACATGGGGAGACTATGCCGGGGCAATGACATATTTTGCCGAATCATCTCCATATAAGCTTCGTAACTCATTACGTATTAGACCAGCAATTGCGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCttt < 2:948605/149‑1 (MQ=255)
aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCCGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGACATTCGCACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:909570/149‑1 (MQ=255)
aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTCCATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt > 1:1601219/1‑149 (MQ=255)
aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1114418/149‑1 (MQ=255)
aaCAGGTGGAGAGCATGCGGGGGTAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1204225/149‑1 (MQ=255)
cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1247478/149‑1 (MQ=255)
cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1239687/149‑1 (MQ=255)
ggAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGa > 1:540502/1‑149 (MQ=255)
aTGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACaa < 1:1106844/149‑1 (MQ=255)
aTGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACaa > 2:1252399/1‑149 (MQ=255)
gcgcacgCAAGGACATCTGTTTCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATTAGTGCTGTTTTAACATTCTTTTTAACAGATGAACaaag > 2:1664597/7‑148 (MQ=255)
gCAATGACATATGTTGCCGAATCATCTCCAGATACGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGcatc > 2:1218965/1‑149 (MQ=255)
aCATATGTTGCCGAATCATCTCCAGATAGGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttgg < 2:142505/149‑1 (MQ=255)
cATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggt > 2:1333236/1‑149 (MQ=255)
cATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggt > 1:1301867/1‑149 (MQ=255)
ttGCCGAATCATCTGCAGATAAGCGTCGGAACTCAGTAGGTAGTGGACTAGAATTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGGGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGgaga < 2:1375853/149‑1 (MQ=255)
ttGCCGAATCATCTCCATATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGTGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGgaga < 2:1052082/149‑1 (MQ=255)
tGCCGAATCATCTCCAGGTAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTGTTTAACAGCTGAACAAATGGCCTCATTTGGGTGgcgag > 1:448348/1‑148 (MQ=255)
tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1060556/1‑149 (MQ=255)
tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1516998/1‑149 (MQ=255)
gCCGAATCGTCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAAt < 1:328562/149‑1 (MQ=255)
ccGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATc > 2:294311/1‑149 (MQ=255)
cGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTCACAGATGAACAAATGGCATCATTTGGTTGGAGAATcc < 2:369675/149‑1 (MQ=255)
catcTCCAGATAAGAGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTTTTTTTAACAGATGAACAAATGGCATCATTTGGTTGTAGAATCCCATTc < 1:1230779/149‑1 (MQ=255)
aGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCg > 1:988444/1‑149 (MQ=255)
aTAAGCCTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGt < 1:1634794/149‑1 (MQ=255)
tcaGCGTCGGAAATCAATAGGTAGTGGACTAGAAATTGGTACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGtt < 2:1590302/147‑1 (MQ=255)
tAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGtt < 1:1422404/149‑1 (MQ=255)
gCGTCGTAACTCCTTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGAGGAACAAATGGCATCAATTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:1168359/1‑149 (MQ=255)
gCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:77590/1‑149 (MQ=255)
cgtcgtAACTCATTAGGTAGTGGGCTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAtt < 2:1467215/149‑1 (MQ=255)
cgtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAtt > 1:1478855/1‑149 (MQ=255)
cgtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGCTTGGAGAATCCCATTCTTACTCGGCTTAtt > 2:1501837/1‑149 (MQ=255)
gtcgtAACTCATTAGGTAGTGGACTATAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTTGAGAATCCCATTCTTACTCGGTTTATTc < 1:1043241/149‑1 (MQ=255)
gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 1:1367999/1‑149 (MQ=255)
gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 2:54746/1‑149 (MQ=255)
cgtAACTCATTAGGTAGTGGACTCGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:1277379/1‑149 (MQ=255)
cgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:699347/1‑149 (MQ=255)
cgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:931547/1‑149 (MQ=255)
aaCTCATTAGGTAGTGGACTAGAAATTGGGACCTTATCAGGGTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAgg < 2:572395/149‑1 (MQ=255)
aCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGa > 1:40281/1‑149 (MQ=255)
tAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTGATCGGTTTATTCCTAGAATTTTTc > 2:1430915/1‑149 (MQ=255)
tAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTc > 2:152722/1‑149 (MQ=255)
ggTAGTGGACTAGAAATTGGGACATTATCAGGTTCCATAGTTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCgg < 2:507314/149‑1 (MQ=255)
gTAGTGGACTAGAAATTGGGACGTTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:1172527/1‑149 (MQ=255)
gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTTATATTCCTGTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 1:326998/1‑149 (MQ=255)
gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATAAACATTCTTTTTACCAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:89639/1‑149 (MQ=255)
gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAACTATGAGTGCTGTATTAACATTCTTTTTAACAGGTGAACAAATGGCAGCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTGGGATTAGTCGGc > 2:754597/1‑149 (MQ=255)
gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CGTCAATTATGAGTGCTGTATTAACTTTCTTTTTAACAGATGGCCAAATGGCAGCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTTCTAGTAGTATTCGGc > 1:223128/1‑149 (MQ=255)
tAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCt < 2:1366627/149‑1 (MQ=255)
gTGGACTAGAAATTGGGCCATTATCAGGTTACGTAGCTG‑CTTCAATTTTGAGTGCTGTATTAACATTCTTTTTAACAGATGATCAAATGGTTTCATTTGGTTGGAGAATCCCATTCTTTCTCGGTTTATTCCTAGGATTATTCGGCTta < 1:766108/149‑1 (MQ=255)
gTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGGATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTta < 1:109543/149‑1 (MQ=255)
ggACTAGAAATTGGGACATCATCAGGTTAAATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGGTTATTCCTAGGATTATTCGGAttttt > 2:779185/1‑146 (MQ=255)
gAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 1:579498/149‑1 (MQ=255)
gAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg > 2:637769/1‑149 (MQ=255)
gAAATTGAGACACTATCAGGTTACATAGCTG‑CTTCAATGATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 2:802992/149‑1 (MQ=255)
aaaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgt < 1:1333236/149‑1 (MQ=255)
aaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgtc > 1:805612/1‑149 (MQ=255)
aaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgtc > 1:1502770/1‑149 (MQ=255)
tGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTa < 2:60567/149‑1 (MQ=255)
ggACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTGCGTCGTCAg > 1:1353177/1‑149 (MQ=255)
ggACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATACGGCTTATATTGACGTCGTAAg > 1:643983/1‑149 (MQ=255)
gACATTATCATGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGc < 1:170390/149‑1 (MQ=255)
gACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACCTCGTAAGc > 2:1106608/1‑149 (MQ=255)
aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1360842/1‑149 (MQ=255)
aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1444752/1‑149 (MQ=255)
aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:868429/1‑149 (MQ=255)
aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:284365/1‑149 (MQ=255)
cATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTg < 1:294311/149‑1 (MQ=255)
ttATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGga < 1:1015603/149‑1 (MQ=255)
aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTTTTTTTTTTTCAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGCAGAAt > 2:1064627/1‑149 (MQ=255)
aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 2:1308031/1‑149 (MQ=255)
aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 1:537319/1‑149 (MQ=255)
aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGATGGAAGAAt > 2:206369/1‑149 (MQ=255)
ggTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTAATGCTGATGGTTATTCGGCTTCTATTTACGTCGTAAGCTGGAAGAATc > 1:1414675/1‑149 (MQ=255)
ttACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCAc < 2:1104713/149‑1 (MQ=255)
gctg‑ctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGACGAATCACCGGcttt > 2:264393/1‑149 (MQ=255)
ctg‑ctTCGATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGACTCCCATTCTTACTCGGTTTATTCCTGGGATTCTTCGGCTTATATTTACGGCATCAGCTAgcagacaagccacttttc > 2:1327986/1‑136 (MQ=255)
ctg‑ctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTTGTAAGCTAGAAGAATCACCAGttttt > 2:1699415/1‑148 (MQ=255)
tGATTGCTGTAATAACATTCTCTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGtt < 2:1016950/149‑1 (MQ=255)
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GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > CP000730/632260‑632550
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
