Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F177 I1 R1	35	90.2	1937232	96.2%	1863617	139.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	2,274,965	G→C	E106D (GAG→GAC)	bglG →	transcriptional antiterminator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,274,965	0	G	C	98.8%	296.5 / NA	81	E106D (GAG→GAC)	bglG	transcriptional antiterminator
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (36/44); total (37/44)
Fisher's exact test for biased strand distribution p-value = 4.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAAAAAGGGCTACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAG‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACT  >  CP000730/2274828‑2275101

aaaaaaGGGCTACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCa                                                                                                                                       <  2:485443/141‑1 (MQ=255)

    aaGGGCTACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTa                                                                                                                                   <  2:332063/141‑1 (MQ=255)

       ggCTACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAAc                                                                                                                                <  1:590149/141‑1 (MQ=255)

          tACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAGGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAat                                                                                                                             <  1:715092/141‑1 (MQ=255)

            cGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAatat                                                                                                                           <  2:816180/141‑1 (MQ=255)

                ttGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTACTTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGtt                                                                                                                       >  1:228315/1‑141 (MQ=255)

                  gCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTa                                                                                                                     >  1:146917/1‑141 (MQ=255)

                      gCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAgcgc                                                                                                                 >  1:574112/1‑141 (MQ=255)

                        acaGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCaa                                                                                                               <  2:107791/141‑1 (MQ=255)

                        acaGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCaa                                                                                                               <  1:281224/141‑1 (MQ=255)

                        acaGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCaa                                                                                                               >  1:42071/1‑141 (MQ=255)

                            aTTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGaaa                                                                                                           <  1:591573/141‑1 (MQ=255)

                            aTTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGaaa                                                                                                           <  2:953897/141‑1 (MQ=255)

                            aTTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCGTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGaaa                                                                                                           <  2:955053/141‑1 (MQ=255)

                              tCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATTCGAGCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAAtt                                                                                                         >  1:946616/1‑141 (MQ=255)

                              tCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAAtt                                                                                                         <  1:298054/141‑1 (MQ=255)

                                tGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTgg                                                                                                       <  2:666200/141‑1 (MQ=255)

                                tGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTgg                                                                                                       >  1:587428/1‑141 (MQ=255)

                                     tAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGttt                                                                                                  <  2:120297/141‑1 (MQ=255)

                                     tAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGttt                                                                                                  <  2:193564/141‑1 (MQ=255)

                                     tAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGttt                                                                                                  >  1:12299/1‑141 (MQ=255)

                                       aaCGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCt                                                                                                >  2:648833/1‑141 (MQ=255)

                                         cGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGt                                                                                              >  1:835980/1‑141 (MQ=255)

                                          gATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTc                                                                                             <  2:635780/141‑1 (MQ=255)

                                          gATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGGTTAGCGCAAGAAATTGGCGTTTCTGTc                                                                                             >  2:938959/1‑141 (MQ=255)

                                            tttGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCa                                                                                           >  1:790635/1‑141 (MQ=255)

                                               gAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGAc                                                                                        <  2:533359/141‑1 (MQ=255)

                                                 aGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTCTTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACtt                                                                                      >  2:210166/1‑141 (MQ=255)

                                                  gCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATTCAAGCCAAGGAC‑CCAGTTCACCAATGTAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACttt                                                                                     >  1:189579/1‑141 (MQ=255)

                                                  gCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACttt                                                                                     <  2:790257/141‑1 (MQ=255)

                                                      tCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCa                                                                                 <  2:383429/141‑1 (MQ=255)

                                                      tCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCa                                                                                 >  2:267333/1‑141 (MQ=255)

                                                        gATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑ACAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCaaa                                                                               <  2:867647/141‑1 (MQ=255)

                                                           tGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGAt                                                                            >  1:806656/1‑141 (MQ=255)

                                                              acaacaTCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGtt                                                                         <  2:492868/141‑1 (MQ=255)

                                                                 acaTCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCTTTTCTGTCCAGACTTTAGCAAAGATGTTAga                                                                      <  2:143959/141‑1 (MQ=255)

                                                                  caTCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAgat                                                                     <  1:249892/141‑1 (MQ=255)

                                                                   aTCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTCATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAgatg                                                                    >  1:699153/1‑141 (MQ=255)

                                                                      aaaCCATTGACTTATCTGTTGAAGGGCAGAAAGCAATCAGTATATACGCTTTGATTCAAGCCAAGAAC‑CCAGTTATACTATATAGCTTAGCGCAAGAAAATTGCGTTACTTGCTTGACTTTTACGAAGATGATAgacgttt                                                                 >  2:434912/1‑136 (MQ=255)

                                                                       aaCCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGAttt                                                                <  1:159757/141‑1 (MQ=255)

                                                                             tGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCt                                                          <  2:866269/141‑1 (MQ=255)

                                                                                cTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGa                                                       >  2:223340/1‑141 (MQ=255)

                                                                                     cTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTaa                                                  <  1:925459/141‑1 (MQ=255)

                                                                                      tGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTaaa                                                 <  1:42082/141‑1 (MQ=255)

                                                                                       gTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGACGTTAGATGATTTAGAGCTTGATTTAAAt                                                <  2:292844/141‑1 (MQ=255)

                                                                                           aaGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGt                                            >  1:967934/1‑141 (MQ=255)

                                                                                             gagCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTAc                                          <  2:892809/141‑1 (MQ=255)

                                                                                               gCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCa                                        >  1:594561/1‑141 (MQ=255)

                                                                                                cAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCaa                                       >  2:549238/1‑141 (MQ=255)

                                                                                                 aGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAAc                                      >  2:514556/1‑141 (MQ=255)

                                                                                                  gAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACt                                     <  1:683677/141‑1 (MQ=255)

                                                                                                   aaaGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTa                                    >  1:120831/1‑141 (MQ=255)

                                                                                                    aaGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTAt                                   <  2:22851/141‑1 (MQ=255)

                                                                                                    aaGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTAt                                   >  2:672984/1‑141 (MQ=255)

                                                                                                     aGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATc                                  >  1:718860/1‑141 (MQ=255)

                                                                                                     aGTAATTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATc                                  >  1:636467/1‑141 (MQ=255)

                                                                                                        aaTTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCttt                               >  2:944203/1‑141 (MQ=255)

                                                                                                        aaTTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCttt                               <  1:821731/141‑1 (MQ=255)

                                                                                                        aaTTATTATATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCttt                               >  2:413788/1‑141 (MQ=255)

                                                                                                          ttattaTATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTAt                             >  1:826958/1‑141 (MQ=255)

                                                                                                           tattatATACGCTTTGATACAAGCC‑AGGAGCCCAGGTGGGCTTTAGAGGTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTAtc                            >  2:529994/1‑141 (MQ=255)

                                                                                                             ttatATACGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTAtctc                          <  2:587779/141‑1 (MQ=255)

                                                                                                              tatataCGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCg                         <  2:796320/141‑1 (MQ=255)

                                                                                                                tataCGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGaa                       >  2:247700/1‑141 (MQ=255)

                                                                                                                  taCGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAg                     <  1:782885/141‑1 (MQ=255)

                                                                                                                   aCGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATTTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGc                    >  1:456342/1‑141 (MQ=255)

                                                                                                                   aCGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGc                    <  1:247955/141‑1 (MQ=255)

                                                                                                                    cGCTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCg                   <  2:885372/141‑1 (MQ=255)

                                                                                                                      cTTTGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTg                 >  2:666348/1‑141 (MQ=255)

                                                                                                                       tttGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTgg                <  1:511914/141‑1 (MQ=255)

                                                                                                                         tGATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCg              >  1:929931/1‑141 (MQ=255)

                                                                                                                          gATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGa             <  2:951688/141‑1 (MQ=255)

                                                                                                                          gATACAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGa             >  2:497667/1‑141 (MQ=255)

                                                                                                                             aCAAGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAgg          <  1:181230/141‑1 (MQ=255)

                                                                                                                               aaGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCa        <  2:675320/141‑1 (MQ=255)

                                                                                                                                aGCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCAt       <  1:960196/141‑1 (MQ=255)

                                                                                                                                 gCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCAtt      <  1:674092/141‑1 (MQ=255)

                                                                                                                                 gCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCAtt      <  1:514556/141‑1 (MQ=255)

                                                                                                                                 gCCAAGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCAtt      <  2:869263/141‑1 (MQ=255)

                                                                                                                                    aaGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTAc   >  1:210476/1‑141 (MQ=255)

                                                                                                                                     aGGAC‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGAACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACt  >  2:924309/1‑141 (MQ=255)

AAAAAAGGGCTACGCATTGCTGGCACAGATTCTGATTTAAACGATTTGAAGCAATCGATTGCACAACATCAAACCATTGACTTATCTGTTGAAGAGCAGAAAGTAATTATTATATACGCTTTGATACAAGCCAAGGAG‑CCAGTTAAACAATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACT  >  CP000730/2274828‑2275101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A