Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A78 F1 I1 R1
|
16 |
49.7 |
3184232 |
95.8% |
3050494 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,285,884 |
G→A |
intergenic (‑190/+40) |
yhbL ← / ← arcB |
isoprenoid biosynthesis protein with amidotransferase‑like domain/hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,285,884 | 0 | G | A | 100.0%
| 237.7
/ NA
| 59 | intergenic (‑190/+40) | yhbL/arcB | isoprenoid biosynthesis protein with amidotransferase‑like domain/hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/29); total (30/29) |
CGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAG > REL606/3285811‑3285959
|
cgtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAgt > 1:1276075/1‑76 (MQ=255)
gtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAgtg > 1:603810/1‑76 (MQ=255)
tGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCa > 1:742733/1‑76 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGt > 1:647958/1‑76 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTa < 2:967968/76‑1 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTa > 2:1552615/1‑76 (MQ=255)
aaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTAt < 1:1231251/76‑1 (MQ=255)
aCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTc > 2:1567006/1‑76 (MQ=255)
aCAGTGCTGTGCCCTTGTAACCCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTc > 2:1037382/1‑76 (MQ=255)
cAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTcg < 2:218993/76‑1 (MQ=255)
cTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAc > 2:1151150/1‑76 (MQ=255)
tgtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAcc < 2:1474721/76‑1 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAccc > 1:494295/1‑76 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAccc < 1:1391748/76‑1 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAcccc > 2:337282/1‑76 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAcccc > 2:443245/1‑76 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAcccc > 2:69689/1‑76 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCAcccc < 1:935850/76‑1 (MQ=255)
gCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCg < 1:177135/76‑1 (MQ=255)
gCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCg < 2:1531663/76‑1 (MQ=255)
cccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCgg < 2:50992/76‑1 (MQ=255)
cTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTc < 1:658454/76‑1 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTa > 1:1039832/1‑76 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTa < 2:478134/76‑1 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTa < 2:722969/76‑1 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACACCGGTCTa > 1:220131/1‑76 (MQ=255)
gTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAg < 2:940197/76‑1 (MQ=255)
gTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAg < 1:389976/76‑1 (MQ=255)
tAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTAGCGCAGTATTCGCGCACCCCGGTCTAGc > 1:1412636/1‑76 (MQ=255)
aaCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGcc < 2:44476/76‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCg > 1:1157029/1‑76 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCg < 2:1404510/76‑1 (MQ=255)
tcatcaTAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCggg < 2:447547/76‑1 (MQ=255)
catcatAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCgggg > 1:523301/1‑76 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGt > 1:859010/1‑76 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGt < 2:1393306/76‑1 (MQ=255)
atcatAATAATTGACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGt < 2:1408901/76‑1 (MQ=255)
catAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCa > 2:874593/1‑76 (MQ=255)
catAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCa > 2:912958/1‑76 (MQ=255)
catAATAATTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGGCa > 1:759795/1‑76 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAtt < 1:1157171/76‑1 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAtt < 2:684535/76‑1 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAtt > 2:890804/1‑76 (MQ=255)
aataatTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAttt > 2:1343696/1‑76 (MQ=255)
aataatTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAttt < 2:174655/76‑1 (MQ=255)
aataatTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAttt < 2:1258441/76‑1 (MQ=255)
ataatTTCCGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAtttt < 1:1005059/76‑1 (MQ=255)
aaatTTAGGGCGCGGCAAAGATTCCCCTAGTGTTGGCGCAGTATTCGCGCCCCCCGGTCTAGCCGGGGTCAttttt < 2:848598/75‑1 (MQ=255)
aatTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCAtttttt < 2:733419/76‑1 (MQ=255)
aatTTACGGCGCAGCCAAGATTTCCCTAGTGTGGGCGCAGTATTCGCGCTCCCCGGTCTAGCCGGGGTCAtttttt < 2:1290322/76‑1 (MQ=255)
atTTACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTa > 2:469418/1‑76 (MQ=255)
tttACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAg > 2:293449/1‑76 (MQ=255)
ttACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGt > 1:1444891/1‑76 (MQ=255)
ttACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGGCATTTTTTAGt > 1:849006/1‑76 (MQ=255)
tACGGCGCAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTg > 2:1019016/1‑76 (MQ=255)
cgcAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCttt < 2:1157465/76‑1 (MQ=255)
cgcAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCtta < 2:496174/76‑2 (MQ=255)
gcAGCCAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCtttt < 2:1190464/76‑1 (MQ=255)
cAAGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGccac > 1:49140/1‑76 (MQ=255)
aaGATTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGGCATTTTTTAGTGGCTTTTGccacc > 1:1239754/1‑76 (MQ=255)
aTTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGccacccac < 2:1406295/76‑1 (MQ=255)
aTTTCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGccacccac < 2:930050/76‑1 (MQ=255)
tttCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 2:667828/1‑76 (MQ=255)
tttCCCTAGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 2:923511/1‑76 (MQ=255)
ggTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg < 1:509076/76‑1 (MQ=255)
|
CGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAG > REL606/3285811‑3285959
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
