mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 475,241 | C→A | G22V (GGC→GTC) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| MC | 547,700 | Δ42,623 bp | between IS1 | [nmpC]–[insK‑1] | 44 genes [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, ECB_00513, ECB_00514, ECB_00515, ECB_00516, ECB_00517, appY, ompT, envY, ybcH, nfrA, nfrB, nfrB, ECB_00524, yhhI, ECB_00526, ECB_00527, ECB_00528, ECB_00529, ECB_00530, cusS, cusR, cusC, ylcC, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, insJ‑1, insK‑1, insB‑7, insA‑7, [insK‑1] |
| MC JC | 1,298,911 | Δ5,910 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| JC JC | 2,045,633 | IS1 (–) +9 bp | coding (652‑660/1086 nt) | rfbB ← | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,285,884 | G→A | intergenic (‑190/+40) | yhbL ← / ← arcB | isoprenoid biosynthesis protein with amidotransferase‑like domain/hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
| RA | 3,570,909 | T→A | I37N (ATC→AAC) | uspA → | universal stress global response regulator |
| JC | 3,612,965 | Δ4 bp | intergenic (‑26/+154) | dctA ← / ← yhjK | C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,907 | A→G | T231A (ACC→GCC) | rho → | transcription termination factor Rho |
| RA | 4,169,030 | T→C | I1357T (ATC→ACC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |