mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 42.5% | 50.5 / 18.2 | 40 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,747,903 | 0 | G | T | 32.4% | 132.5 / 67.0 | 71 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,416,838 | 0 | T | G | 29.1% | 95.1 / 13.7 | 55 | intergenic (+1/‑4) | ECB_01334/ECB_01335 | putative Lysozyme/conserved hypothetical protein |
| * | REL606 | 2,296,329 | 0 | A | C | 24.2% | 161.4 / 12.4 | 62 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 22.4% | 198.9 / 49.5 | 76 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (lowest skew 10 of 44 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3021732 = | 93 (1.880) | 15 (0.330) | 7/138 | 4.3 | 15.3% | coding (953/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022271 = | 81 (1.780) | coding (414/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | 2040012 = | 32 (0.650) | 6 (0.140) | 6/132 | 4.5 | 16.2% | coding (117/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040259 = | 34 (0.780) | intergenic (‑131/+12) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | 2038724 = | 23 (0.460) | 12 (0.270) | 6/134 | 4.6 | 24.6% | coding (225/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039214 = | 53 (1.200) | coding (481/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2038432 = | 51 (1.030) | 11 (0.250) | 6/134 | 4.6 | 22.1% | coding (517/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2038941 = | 32 (0.720) | coding (8/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 3737859 = | 62 (1.250) | 13 (0.290) | 5/136 | 5.0 | 18.2% | intergenic (‑33/+13) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738439 = | 61 (1.360) | coding (417/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| * | ? | REL606 | 2041054 = | 44 (0.890) | 7 (0.160) | 5/136 | 5.0 | 12.6% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 57 (1.270) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2037366 | 62 (1.250) | 7 (0.160) | 5/136 | 5.0 | 12.7% | coding (765/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037865 | 40 (0.890) | coding (266/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | 3582455 = | 68 (1.370) | 7 (0.150) | 5/138 | 5.1 | 9.2% | coding (475/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | 3582988 = | 76 (1.670) | coding (1008/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | 3022275 = | 81 (1.640) | 9 (0.190) | 5/140 | 5.2 | 9.7% | coding (410/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022861 = | 92 (1.990) | intergenic (‑177/+397) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | 3022200 = | 45 (0.910) | 10 (0.210) | 5/142 | 5.2 | 14.8% | coding (485/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022657 = | 73 (1.560) | coding (28/1140 nt) | ECB_02821 | hypothetical protein | |||||