Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A33 F1 I1 R1
|
22 |
54.4 |
3455062 |
95.8% |
3309949 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,928,955 |
A→G |
I247V (ATC→GTC) |
rho → |
transcription termination factor Rho |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,928,955 | 0 | A | G | 100.0%
| 203.2
/ NA
| 48 | I247V (ATC→GTC) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/22); total (26/22) |
GTAAAAGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGATCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCGTCTGG > REL606/3928883‑3929027
|
gTAAAAGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCg < 2:1006054/76‑1 (MQ=255)
gTAAAAGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCg > 1:66709/1‑76 (MQ=255)
aaaaGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCgag > 1:990181/1‑76 (MQ=255)
aaaGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCgaga < 1:721544/76‑1 (MQ=255)
aaaGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCgaga < 1:597604/76‑1 (MQ=255)
aaGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGaa > 2:1179675/1‑76 (MQ=255)
tgttgCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGc < 2:934474/76‑1 (MQ=255)
gttgCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGcc > 1:1691537/1‑76 (MQ=255)
tgCTTCTCCCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGTAAATGGTGGTCGAGAAGGCCAAACGCCTg < 1:671987/76‑1 (MQ=255)
cTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGt > 1:117322/1‑76 (MQ=255)
cTTCTACCTTTAACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGt > 2:898039/1‑76 (MQ=255)
tCTACCCTTGACGTACCCTCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTg < 2:1122037/76‑1 (MQ=255)
tACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAg > 2:1510586/1‑76 (MQ=255)
aCCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGc < 1:513532/76‑1 (MQ=255)
cTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGcac > 1:37952/1‑76 (MQ=255)
tttGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGcaca > 1:188160/1‑76 (MQ=255)
tGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACaag > 2:346282/1‑76 (MQ=255)
aCGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACaagaa > 2:1633563/1‑76 (MQ=255)
aCGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACaagaa < 2:117322/76‑1 (MQ=255)
gAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACaagaaag > 2:588238/1‑76 (MQ=255)
aaCCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACaagaaaga < 2:495857/76‑1 (MQ=255)
ccGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGt < 2:13847/76‑1 (MQ=255)
cGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGtt < 2:50388/76‑1 (MQ=255)
cGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGtt < 2:373412/76‑1 (MQ=255)
gCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTa < 1:908468/76‑1 (MQ=255)
gCATCTCGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTa < 2:879348/76‑1 (MQ=255)
ctcGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCAt < 1:160300/76‑1 (MQ=255)
ctcGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCAt < 1:1399596/76‑1 (MQ=255)
ctcGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCAt > 1:370966/1‑76 (MQ=255)
ctcGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCAt < 1:56141/76‑1 (MQ=255)
ctcGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCAt < 2:1534027/76‑1 (MQ=255)
cGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTc > 2:1168349/1‑76 (MQ=255)
cGCCACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTc > 2:192127/1‑76 (MQ=255)
cACGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGc > 2:1489632/1‑76 (MQ=255)
aCGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCt > 2:34939/1‑76 (MQ=255)
cGTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTc > 2:1008195/1‑76 (MQ=255)
gTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCg < 1:1621945/76‑1 (MQ=255)
gTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCg < 2:773238/76‑1 (MQ=255)
gTTCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCg < 1:236976/76‑1 (MQ=255)
ttCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGa > 1:754739/1‑76 (MQ=255)
tCAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGAc < 2:606619/76‑1 (MQ=255)
cAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACt > 2:155996/1‑76 (MQ=255)
cAGGTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACt > 2:518358/1‑76 (MQ=255)
ggTTGCGGAAATGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGGCTcc > 1:1079527/1‑76 (MQ=255)
aaaTGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCg < 2:1115749/76‑1 (MQ=255)
gaTGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACATTATCATTCTGCTCGACTCCATCACTCGt > 2:292592/2‑76 (MQ=255)
aaTGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCGt > 2:911585/1‑76 (MQ=255)
aTGGTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCGTc > 1:205651/1‑76 (MQ=255)
gTGGTCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCGTCTgg > 1:933016/1‑76 (MQ=255)
|
GTAAAAGGTGAAGTTGTTGCTTCTACCTTTGACGAACCCGCATCTCGCCACGTTCAGGTTGCGGAAATGGTGATCGAGAAGGCCAAACGCCTGGTTGAGCACAAGAAAGACGTTATCATTCTGCTCGACTCCATCACTCGTCTGG > REL606/3928883‑3929027
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
