mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 242,203 | (G)8→7 | coding (193/372 nt) | ECB_00212 → | hypothetical protein |
| RA | 447,351 | G→A | intergenic (‑123/‑95) | tesB ← / → ybaY | acyl‑CoA thioesterase II/predicted outer membrane lipoprotein |
| RA | 474,651 | 2 bp→T | coding (654‑655/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 474,656 | Δ1 bp | coding (650/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,031,943 | C→T | P285P (CCG→CCA) | manB ← | Phosphomannomutase |
| RA | 2,032,210 | T→A | A196A (GCA→GCT) | manB ← | Phosphomannomutase |
| RA | 2,055,515 | G→T | N194K (AAC→AAA) | cpsG ← | phosphomannomutase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,015,178 | A→T | D200V (GAT→GTT) | ECB_02816 → | KpsD protein |
| RA | 3,175,323 | G→T | N342K (AAC→AAA) | uxaA ← | altronate hydrolase |
| RA | 3,328,579 | C→A | G134C (GGT→TGT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,497,881 | C→T | R52H (CGT→CAT) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,955 | A→G | I247V (ATC→GTC) | rho → | transcription termination factor Rho |
| RA | 4,168,967 | C→T | A1336V (GCC→GTC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 4,232,858 | T→C | intergenic (+38/+117) | ubiA → / ← plsB | 4‑hydroxybenzoate octaprenyltransferase/glycerol‑3‑phosphate acyltransferase |
| RA | 4,504,889 | (A)8→7 | intergenic (+633/‑92) | insB‑25 → / → ECB_04162 | b4563(b4576); IS1 protein insB/hypothetical protein |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546976–547700 | 593432 | 45733–46457 | 17 [16] | [16] 17 | [insB‑6]–[fepA] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,ECB_00513,ECB_00514,ECB_00515,ECB_00516,ECB_00517,appY,ompT,envY,ybcH,nfrA,nfrB,nfrB,ECB_00524,yhhI,ECB_00526,ECB_00527,ECB_00528,ECB_00529,ECB_00530,cusS,cusR,cusC,ylcC,cusB,cusA,pheP,ybdG,nfnB,ybdF,ybdJ,ybdK,insJ‑1,insK‑1,insB‑7,insA‑7,insK‑1,hokE,insL‑3,entD,[fepA] |
| * | * | ÷ | REL606 | 593527 | 619819–619116 | 25590–26293 | 17 [16] | [14] 17 | [fepA]–[insA‑8] | [fepA],fes,ybdZ,entF,fepE,fepC,fepG,fepD,ybdA,fepB,entC,entE,entB,entA,ybdB,cstA,cstA,ybdD,ybdH,ybdL,ybdM,ybdN,insB‑8,[insA‑8] |
| * | * | ÷ | REL606 | 2031960 | 2032197 | 238 | 18 [16] | [15] 17 | manB | Phosphomannomutase |
| * | * | ÷ | REL606 | 2032319–2032367 | 2055243 | 22877–22925 | 17 [16] | [16] 18 | [manB]–[cpsG] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,[cpsG] |