mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,004,106 | 0 | A | C | 45.3% | 75.5 / 20.8 | 53 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 3,983,700 | 0 | T | G | 44.4% | 32.2 / 20.9 | 36 | T397P (ACC→CCC) | ECB_03713 | conserved hypothetical protein |
| * | REL606 | 1,688,990 | 0 | A | C | 42.5% | 61.5 / 22.0 | 47 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 1,484,105 | 0 | A | G | 37.1% | 42.6 / 19.3 | 35 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 3,492,082 | 0 | T | G | 33.3% | 70.9 / 16.4 | 42 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 500,213 | 0 | A | C | 31.6% | 62.3 / 10.5 | 38 | H33P (CAC→CCC) | ylbH | conserved protein, rhs‑like |
| * | REL606 | 4,141,009 | 0 | G | A | 29.8% | 99.8 / 15.5 | 47 | E28K (GAA→AAA) | yijC | DNA‑binding transcriptional repressor |
| * | REL606 | 1,747,903 | 0 | G | T | 29.2% | 149.7 / 50.7 | 65 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 4,195,874 | 0 | A | C | 29.2% | 104.5 / 11.4 | 48 | T318P (ACC→CCC) | aceB | malate synthase |
| * | REL606 | 154,497 | 0 | T | G | 28.8% | 114.5 / 10.9 | 52 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,875,483 | 0 | G | C | 20.0% | 221.3 / 41.1 | 75 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2574614 = | 75 (1.380) | 4 (0.090) | 4/126 | 5.3 | 6.3% | intergenic (+456/+362) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| ? | REL606 | 2574646 = | 57 (1.260) | intergenic (+488/+330) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate | |||||
| * | ? | REL606 | = 2718696 | 73 (1.350) | 6 (0.130) | 4/130 | 5.4 | 8.6% | intergenic (‑68/+12) | recA/ygaD | recombinase A/competence damage‑inducible protein A |
| ? | REL606 | = 2718698 | 64 (1.370) | intergenic (‑70/+10) | recA/ygaD | recombinase A/competence damage‑inducible protein A | |||||
| * | ? | REL606 | = 2679623 | 88 (1.620) | 7 (0.140) | 4/140 | 5.8 | 8.2% | coding (695/1557 nt) | ECB_02510 | Recombinase |
| ? | REL606 | = 2680101 | 74 (1.460) | coding (1173/1557 nt) | ECB_02510 | Recombinase | |||||
| * | ? | REL606 | = 540952 | 78 (1.440) | 7 (0.150) | 3/132 | 6.1 | 8.6% | coding (161/1527 nt) | ybcK | predicted recombinase |
| ? | REL606 | = 541418 | 80 (1.680) | coding (627/1527 nt) | ybcK | predicted recombinase | |||||
| * | ? | REL606 | 3026311 = | 83 (1.530) | 8 (0.160) | 3/140 | 6.3 | 9.3% | coding (492/1377 nt) | ECB_02826 | hypothetical protein |
| ? | REL606 | 3026805 = | 79 (1.560) | intergenic (‑3/+206) | ECB_02826/ECB_02827 | hypothetical protein/Polysialic acid transport ATP‑binding KpsT | |||||