Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A64 F1 I1 R1
|
17 |
58.5 |
3743480 |
96.8% |
3623688 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
2,490,667 |
Δ16 bp |
coding (485‑500/837 nt) |
eutJ ← |
predicted chaperonin, ethanolamine utilization protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
2490667 |
2490682 |
16 |
39 [0] |
[0] 39 |
eutJ |
predicted chaperonin, ethanolamine utilization protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2490666 | 0 (0.000) | 37 (0.700) |
27/136 |
1.1 |
100% |
coding (501/837 nt) |
eutJ |
predicted chaperonin, ethanolamine utilization protein |
| ? | REL606 |
2490683 = |
0 (0.000) | coding (484/837 nt) |
eutJ |
predicted chaperonin, ethanolamine utilization protein |
GATK/CNVnator alignment
N/A
