Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,440,659 |
T→C |
intergenic (+35/+24) |
feaB → / ← tynA |
phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,440,659 | 0 | T | C | 99.5%
| 907.7
/ ‑5.5
| 219 | intergenic (+35/+24) | feaB/tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (119/99); total (119/100) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 230 total aligned reads displayed.
GGTTGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGTGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCAAAGAAG > REL606/1440586‑1440731
|
ggTTGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGgcgc > 2:741491/1‑76 (MQ=255)
gTTGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGcc < 2:2671475/76‑1 (MQ=255)
ttGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCg < 2:253332/76‑1 (MQ=255)
tGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGt > 1:4573983/1‑76 (MQ=255)
ggTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGtt > 2:2810018/1‑76 (MQ=255)
tgtgAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGtttt > 2:3835470/1‑76 (MQ=255)
gAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGttttttt > 2:1467039/1‑76 (MQ=255)
gAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGttttttt > 2:2399738/1‑76 (MQ=255)
gAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGttttttt < 2:4934828/76‑1 (MQ=255)
cTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAGAAACGGCGCCTGGCGCCGTTTTTTTAGTc < 2:2382466/76‑1 (MQ=255)
cTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAACAAAGGCGACTGGAGCCGTTTTGTTATTc > 2:2473307/1‑76 (MQ=255)
cTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTc > 1:5537320/1‑76 (MQ=255)
cTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTc > 2:52188/1‑76 (MQ=255)
tAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCt < 2:822780/76‑1 (MQ=255)
aGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGa > 1:3014711/1‑76 (MQ=255)
gTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGaa > 1:6050818/1‑76 (MQ=255)
cGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGaaag > 2:6170204/1‑75 (MQ=255)
cGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAc < 2:5277190/76‑1 (MQ=255)
cGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAc < 2:4274234/76‑1 (MQ=255)
cGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAc < 2:6270259/76‑1 (MQ=255)
cGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAc > 1:3525351/1‑76 (MQ=255)
ggTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAca > 2:3678846/1‑76 (MQ=255)
ggTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAca < 2:2912917/76‑1 (MQ=255)
gtgtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaa > 1:3930331/1‑76 (MQ=255)
gtgtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaa > 1:5699651/1‑76 (MQ=255)
gtgtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaa < 1:4396610/76‑1 (MQ=255)
gtgtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaa < 2:5689895/76‑1 (MQ=255)
tgtttgtACGGGATTAATCCTGTTCGATCATTAGTAAAAAACGGCGCCTTGCGCCGTTTTTTTAGTCCGAAAaaat < 2:3100512/76‑1 (MQ=255)
tgtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAACCGGCGCCTGGCCCCGTTTTTTTAGTCTGAAAcaat < 1:1774385/76‑1 (MQ=255)
gtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatc < 2:1320997/76‑1 (MQ=255)
gtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatc < 2:2146551/76‑1 (MQ=255)
gtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatc > 2:2740825/1‑76 (MQ=255)
gtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatc < 1:2404619/76‑1 (MQ=255)
gtgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaata < 2:2479080/76‑2 (MQ=255)
tgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatca > 2:653185/1‑76 (MQ=255)
tgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatca < 2:5483626/76‑1 (MQ=255)
tgtgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatca > 2:38236/1‑76 (MQ=255)
tgtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAAcaatcaat > 1:102755/1‑76 (MQ=255)
gtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAAtt > 2:5890537/1‑76 (MQ=255)
gtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAAtt < 1:3066996/76‑1 (MQ=255)
gtACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAAtt > 2:134778/1‑76 (MQ=255)
gtACGGTATTAATCTTGTTCGCCCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAAtt > 2:3461007/1‑76 (MQ=39)
tACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTa > 1:3692953/1‑76 (MQ=255)
tACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTa > 2:1481384/1‑76 (MQ=255)
tACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTa > 2:1560723/1‑76 (MQ=255)
aCGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAt < 2:3495536/76‑1 (MQ=255)
aCGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAt < 2:4380599/76‑1 (MQ=255)
cGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtc > 2:1914638/1‑76 (MQ=255)
cGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtc < 1:2129638/76‑1 (MQ=255)
gTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctt > 2:4705165/1‑76 (MQ=255)
gTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctt > 1:4834761/1‑76 (MQ=255)
tATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtcttt < 1:1717357/76‑1 (MQ=255)
tAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctttctt > 1:5765708/1‑76 (MQ=255)
tAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctttctt < 1:52663/76‑1 (MQ=255)
tAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctttctt < 2:5160250/76‑1 (MQ=255)
tAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTAtctttctt > 1:2704484/1‑76 (MQ=255)
aaTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTttcttc > 1:1422208/1‑76 (MQ=255)
aaTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTttcttc > 2:899861/1‑76 (MQ=255)
aaTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTttcttc > 1:998739/1‑76 (MQ=255)
aaTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTttcttc > 2:1745541/1‑76 (MQ=255)
atattGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGATACCGTCAATTATCTTTCTTCa > 2:5586309/4‑76 (MQ=38)
aTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCa < 2:5932326/76‑1 (MQ=255)
aTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCa < 1:1978975/76‑1 (MQ=255)
aTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCa > 1:2495302/1‑76 (MQ=255)
aTCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCa > 2:2975359/1‑76 (MQ=255)
tCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAg > 1:520960/1‑76 (MQ=255)
cTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAgc > 1:4246677/1‑76 (MQ=255)
ttGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAgcg > 1:4829156/1‑76 (MQ=255)
tGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAgcgc > 2:2568530/1‑76 (MQ=255)
tGTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAgcgc > 1:5645004/1‑76 (MQ=255)
gTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGcc > 1:5143835/1‑76 (MQ=255)
gTTCGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGcc > 2:5748998/1‑76 (MQ=255)
cGCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCt < 1:2609609/76‑1 (MQ=255)
gcccATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTa < 1:3461007/73‑1 (MQ=255)
gCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTa > 2:4434034/1‑76 (MQ=255)
gCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTa < 1:134778/76‑1 (MQ=255)
gCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTa < 1:549674/76‑1 (MQ=255)
gCTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTa < 2:1140373/76‑1 (MQ=255)
cTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAg < 1:3239762/76‑1 (MQ=255)
cTCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAg > 2:5848406/1‑76 (MQ=255)
tCATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGc > 2:3332302/1‑76 (MQ=255)
cATAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCg > 2:2281872/1‑76 (MQ=255)
aTAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGt > 2:4471434/1‑76 (MQ=255)
aTAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGt > 2:1597447/1‑76 (MQ=255)
aTAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGt > 2:2896894/1‑76 (MQ=255)
aTAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGt > 2:3623429/1‑76 (MQ=255)
tAAGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGtt > 2:468279/1‑76 (MQ=255)
aaGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTg > 1:2811097/1‑76 (MQ=255)
aaGTAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTg > 1:188342/1‑76 (MQ=255)
tAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCg < 2:3282022/76‑1 (MQ=255)
tAAAAAACGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCg < 1:5230339/76‑1 (MQ=255)
aaaaaaCGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGt > 2:4843919/1‑76 (MQ=255)
aaCGGCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCg > 2:4916340/1‑76 (MQ=255)
cGGCGCCTTGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTc > 2:3091703/1‑76 (MQ=255)
ggCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCa < 2:5976441/76‑1 (MQ=255)
ggCGCCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCa < 1:4185489/76‑1 (MQ=255)
gcgcCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCaa < 1:3757662/76‑1 (MQ=255)
gcCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCAaag < 1:6237633/76‑1 (MQ=255)
gcCTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCAaag < 1:5077596/76‑1 (MQ=255)
cTGGCGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCAaagaa < 2:2196640/76‑1 (MQ=255)
|
GGTTGGTGTGAAACTAAGTCGGTGTGTGTACGGTATTAATCTTGTTCGCTCATAAGTAAAAAACGGCGCCTGGTGCCGTTTTTTTAGTCTGAAACAATCAATTATCTTTCTTCAGCGCCCCTAGCGTTGGCGTTTCGTCAAAGAAG > REL606/1440586‑1440731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
