Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,448,469 |
A→G |
intergenic (+13/‑3) |
ynbB → / → ynbC |
predicted CDP‑diglyceride synthase/predicted hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,448,469 | 0 | A | G | 98.8%
| 701.1
/ ‑3.4
| 169 | intergenic (+13/‑3) | ynbB/ynbC | predicted CDP‑diglyceride synthase/predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (98/68); total (100/69) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 176 total aligned reads displayed.
TGACTCATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGAAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCGG > REL606/1448396‑1448540
|
tGACTCATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGgaa < 1:1616866/76‑1 (MQ=255)
aCTCATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAAt > 1:167054/1‑76 (MQ=255)
aCTCATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAAt < 1:4707153/76‑1 (MQ=255)
cATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGa < 1:2795485/76‑1 (MQ=255)
aTTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGaa < 2:1556791/76‑1 (MQ=255)
ttAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGaaa > 2:970598/1‑76 (MQ=255)
tAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGCAATGGaaaa > 2:898880/1‑76 (MQ=255)
aaTTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGCGGAAATGGAAAAt > 2:1257414/1‑76 (MQ=255)
aTTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAAtt > 1:4048909/1‑76 (MQ=255)
tttCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCa > 2:770121/1‑76 (MQ=255)
tttCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCa > 1:5944310/1‑76 (MQ=255)
tttCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCa > 2:1185669/1‑76 (MQ=255)
tttCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCa < 2:2708081/76‑1 (MQ=255)
ttCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCAc < 2:6304686/76‑1 (MQ=255)
tCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACg > 1:3851984/1‑76 (MQ=255)
tCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACg < 2:4047515/76‑1 (MQ=255)
tCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACg > 1:1714167/1‑76 (MQ=255)
cACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGc > 1:1796612/1‑76 (MQ=255)
aCCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCa < 1:3428373/76‑1 (MQ=255)
tCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCt > 2:2074436/1‑76 (MQ=255)
ccGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTg < 1:6307123/76‑1 (MQ=255)
ccGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTg < 2:4547125/76‑1 (MQ=255)
cGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTgg > 1:559070/1‑76 (MQ=255)
ggTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTggg < 2:2386275/76‑1 (MQ=255)
ggTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTggg > 2:3184989/1‑76 (MQ=255)
ggTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTggg < 1:757750/76‑1 (MQ=255)
gTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTgggg > 2:2464089/1‑76 (MQ=255)
tgtttttttATTTTATACAGTACTGCTGTTACTGAAGGACTATAGAGGAACTGGACAATTCACGCATACGTGGGGa > 2:3010315/3‑76 (MQ=255)
aTTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGaa < 1:1257414/76‑1 (MQ=255)
ttttttATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACa > 1:5397107/1‑76 (MQ=255)
ttttttATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACa > 1:5531966/1‑76 (MQ=255)
tttttATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAt < 1:3742947/76‑1 (MQ=255)
tttttATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAt < 2:146388/76‑1 (MQ=255)
tttttATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAt > 1:887809/1‑76 (MQ=255)
ttttattttaTACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtt > 1:196094/1‑76 (MQ=255)
ttttattttaTACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtt > 1:3482955/1‑76 (MQ=255)
ttattttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtttt > 1:1033442/1‑76 (MQ=255)
ttattttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtttt > 1:5734444/1‑76 (MQ=255)
attttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtttttt > 2:4400899/1‑76 (MQ=255)
attttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACAtttttt < 2:355365/76‑1 (MQ=255)
tttatACTCTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTa < 2:4033400/76‑1 (MQ=255)
ttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTac > 2:2289136/1‑76 (MQ=255)
ttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTac < 1:187808/76‑1 (MQ=255)
ttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTac > 1:5892943/1‑76 (MQ=255)
ttatACACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTac > 1:5127293/1‑76 (MQ=255)
ttatACACTACTGCTGTTACTGAAGGAAAATAGAGAAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTac > 1:3070678/1‑76 (MQ=255)
tataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacc > 1:2709407/1‑76 (MQ=255)
tataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacc > 1:481811/1‑76 (MQ=255)
ataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacca > 1:2519966/1‑76 (MQ=255)
ataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacca > 1:4142771/1‑76 (MQ=255)
ataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacca < 1:520577/76‑1 (MQ=255)
ataCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTacca > 1:4581685/1‑76 (MQ=255)
taCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTaccac > 2:3629805/1‑76 (MQ=255)
taCACTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTaccac > 1:831562/1‑76 (MQ=255)
acacTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTaccacc > 2:4017255/1‑76 (MQ=255)
acacTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTaccacc < 2:749739/76‑1 (MQ=255)
cacTCCTGCTGTTACTGATTGAAAATAGAGTAATGGGAAAATTCACGCATCCCTGGGGAACATTTTTTTAcaacca > 2:4564804/1‑76 (MQ=255)
cacTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTAccacca > 1:5432609/1‑76 (MQ=255)
cacTACTGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTAccacca > 1:2669648/1‑76 (MQ=255)
actactGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAg > 1:3559496/1‑76 (MQ=255)
actactGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAg < 1:3255198/76‑1 (MQ=255)
tactGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTg > 1:3529303/1‑76 (MQ=255)
tactGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTg > 1:4002956/1‑76 (MQ=255)
tactGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTg < 1:2211325/76‑1 (MQ=255)
actGCTGTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGa > 2:5917769/1‑76 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGat > 2:4233217/1‑76 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGat > 1:2514104/1‑76 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGat < 2:2573129/76‑1 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGat > 1:2858526/1‑76 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGat > 1:2929056/1‑76 (MQ=255)
ctgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACAAGGGat > 2:1378541/1‑76 (MQ=255)
tgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGata > 1:1348194/1‑76 (MQ=255)
tgctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGata > 1:6196439/1‑76 (MQ=255)
gctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataa > 2:6025238/1‑76 (MQ=255)
gctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataa < 1:2756036/76‑1 (MQ=255)
gctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataa > 1:3652407/1‑76 (MQ=255)
gctgTTACTGAAGGAAAATAGAGAAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCCCCAGTGataa < 2:5482577/76‑1 (MQ=255)
ctgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataat < 2:5104495/76‑1 (MQ=255)
tgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataata > 1:5685512/1‑76 (MQ=255)
tgTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGataata > 2:244325/1‑76 (MQ=255)
gTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATAc < 2:3720382/76‑1 (MQ=255)
gTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATAc < 2:3459527/76‑1 (MQ=255)
gTTACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATAc < 1:1818807/76‑1 (MQ=255)
ttACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACa < 1:3378705/76‑1 (MQ=255)
ttACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACa > 2:2625318/1‑76 (MQ=255)
ttACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACa > 2:1919503/1‑76 (MQ=255)
tACTGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAg < 2:3513511/76‑1 (MQ=255)
aCTGAAGGAAAATAGAGAAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGc > 1:879708/1‑76 (MQ=255)
tGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCgt > 2:4123346/1‑76 (MQ=255)
tGAAGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCgt > 1:2426350/1‑76 (MQ=255)
aaGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCgttg < 1:3612557/76‑1 (MQ=255)
aaGGAAAATAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCgttg > 2:2079066/1‑76 (MQ=255)
aaaaTAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGtttt > 1:3464420/1‑76 (MQ=255)
aaaaTAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGtttt < 1:6021477/76‑1 (MQ=255)
aaaaTAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGtttt < 1:2371903/76‑1 (MQ=255)
aaaTAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTa < 2:2906071/76‑1 (MQ=255)
tAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCg > 2:4876409/1‑76 (MQ=255)
tAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCg < 2:810827/76‑1 (MQ=255)
tAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCg > 2:4103113/1‑76 (MQ=255)
tAGAGGAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCg > 2:3979468/1‑76 (MQ=255)
|
TGACTCATTAATTTTCACCGCTCCGGTATTTTTTTATTTTATACACTACTGCTGTTACTGAAGGAAAATAGAGAAAATGGAAAATTCACGCATCCCTGGGGAACATTTTTTTACCACCAGTGATAATACAGCGTTGTTTTATCGG > REL606/1448396‑1448540
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
