Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,505,141 |
A→G |
intergenic (+175/‑7) |
ydcD → / → ECB_01416 |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,505,141 | 0 | A | G | 98.7%
| 617.9
/ ‑1.4
| 148 | intergenic (+175/‑7) | ydcD/ECB_01416 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (71/75); total (73/75) |
| Fisher's exact test for biased strand distribution p-value = 2.42e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.71e-01 |
Only 100 of 150 total aligned reads displayed.
ATTTTCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAGGTT > REL606/1505068‑1505213
|
aTTTTCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCg < 2:4576660/76‑1 (MQ=255)
aTTTTCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCg > 1:3953128/1‑76 (MQ=255)
ttCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCACCa < 1:2515280/76‑1 (MQ=255)
tCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAg > 1:75007/1‑76 (MQ=255)
cATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAgg > 1:1028516/1‑76 (MQ=255)
aTCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGt > 2:550515/1‑76 (MQ=255)
aTCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGt < 2:5370362/76‑1 (MQ=255)
aTCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGt < 1:1649925/76‑1 (MQ=255)
aTCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGt > 2:2619785/1‑76 (MQ=255)
tCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTg < 2:1485902/76‑1 (MQ=255)
tttGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAg > 1:5925786/1‑76 (MQ=255)
ttGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAga > 1:5435471/1‑75 (MQ=255)
cTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTAtt < 1:1213073/76‑1 (MQ=255)
cTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTAtt > 2:4136711/1‑76 (MQ=255)
tttAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTc < 2:2387732/76‑1 (MQ=255)
tttAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTc > 2:3103868/1‑76 (MQ=255)
ttAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCa > 2:2719792/1‑76 (MQ=255)
ttAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCa > 1:4534607/1‑76 (MQ=255)
tAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCaa < 1:4690928/76‑1 (MQ=255)
aaCGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCaaa < 2:4420612/76‑1 (MQ=255)
aaCGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCaaa < 2:5435471/76‑1 (MQ=255)
cGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGt > 1:1224961/1‑76 (MQ=255)
ccTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGttt < 2:4058389/76‑1 (MQ=255)
acaaCAGGTGATCAAAATGTAACCGTTGGACTAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATACAAAGttt < 2:4058390/73‑1 (MQ=255)
tACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGc > 1:2655044/1‑76 (MQ=255)
tACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGc < 1:5370891/76‑1 (MQ=255)
aCAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCt > 1:2217756/1‑76 (MQ=255)
aCAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCt > 1:5448217/1‑76 (MQ=255)
aCAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCt > 2:5604245/1‑76 (MQ=255)
aCAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCt > 2:590874/1‑76 (MQ=255)
cAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCtt > 2:1095330/1‑76 (MQ=255)
aGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTg < 1:202883/76‑1 (MQ=255)
aGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTg > 2:507024/1‑76 (MQ=255)
aGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTg > 1:5238031/1‑76 (MQ=255)
gTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGAt > 1:1244372/1‑76 (MQ=255)
tGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGAtt > 1:1004638/1‑76 (MQ=255)
tGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGAtt < 1:1089663/76‑1 (MQ=255)
gATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATta < 1:4621954/76‑1 (MQ=255)
aTCAAAATTTCCCCTTTGGAATAACTAAAAAGATACAAACGGACGCCAGGCGAGACACCGAAGTTTGCTTGATtat > 2:2634520/1‑76 (MQ=255)
aTCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATtat < 2:6102972/76‑1 (MQ=255)
aTCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATtat > 1:6116563/1‑76 (MQ=255)
aaaaTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATAtt < 2:1999890/76‑1 (MQ=255)
aaaaTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATAtt > 1:2644592/1‑76 (MQ=255)
aaaTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATAttt < 2:5360686/76‑1 (MQ=255)
aaTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTc < 1:3863192/76‑1 (MQ=255)
aaTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTc > 1:5090688/1‑76 (MQ=255)
aTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCa > 1:3527752/1‑76 (MQ=255)
aTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCa > 1:1674131/1‑76 (MQ=255)
aTTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCa < 2:4496979/76‑1 (MQ=255)
tttAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAg > 1:3169202/1‑76 (MQ=255)
ttAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGt < 2:4754330/76‑1 (MQ=255)
ttAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGt < 2:1111007/76‑1 (MQ=255)
tAACCTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTg < 1:4050556/76‑1 (MQ=255)
ccTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTGTATTTCAGTGAcc > 1:2949366/1‑76 (MQ=255)
cTTTGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGAccc < 2:585563/76‑1 (MQ=255)
ttGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCt > 1:1251932/1‑76 (MQ=255)
tGGAATAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTg < 1:3672751/76‑1 (MQ=255)
aTAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGatat < 2:1032342/76‑1 (MQ=255)
aTAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGatat < 1:3251435/76‑1 (MQ=255)
tAACTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGAtata > 2:870312/1‑76 (MQ=255)
aaCTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATAc < 1:6236973/76‑1 (MQ=255)
aaCTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATAc > 2:2915531/1‑76 (MQ=255)
aCTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACg < 1:1501489/76‑1 (MQ=255)
aCTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACg < 1:4673977/76‑1 (MQ=255)
aCTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACg < 2:2540778/76‑1 (MQ=255)
cTAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGa < 1:69333/76‑1 (MQ=255)
tAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGac > 2:5397058/1‑76 (MQ=255)
tAAAAAGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGac > 1:2208787/1‑76 (MQ=255)
tAAAAAAAAAAAAAAAGGGGCCAGGGGAGTATTCAAAATTTGCTTGATTATATTTTAGTGACCCCCGATATACGaa > 2:4917912/1‑75 (MQ=255)
aaaaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaa > 2:979745/1‑76 (MQ=255)
aaaaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaa > 1:246001/1‑76 (MQ=255)
aaaaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaa < 2:1256973/76‑1 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca < 1:1973800/76‑1 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca > 2:4285672/1‑76 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca < 1:3492802/76‑1 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca > 2:549169/1‑76 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca < 1:320496/76‑1 (MQ=255)
aaGATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGacaaca < 2:3898399/76‑1 (MQ=255)
gATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAg < 1:5121445/76‑1 (MQ=255)
gATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAg < 1:686038/76‑1 (MQ=255)
gATAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAg < 2:5595542/76‑1 (MQ=255)
aTAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAgg < 1:1473514/76‑1 (MQ=255)
aTAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAgg < 2:1058757/76‑1 (MQ=255)
aTAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAgg < 2:3479833/76‑1 (MQ=255)
aTAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAgg < 2:3167998/76‑1 (MQ=255)
tAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGa > 2:781252/1‑76 (MQ=255)
tAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGa > 2:2958065/1‑76 (MQ=255)
tAAAAAAGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGa > 2:4623533/1‑76 (MQ=255)
aaaaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGaa < 1:1195823/76‑1 (MQ=255)
aaaaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGaa > 1:997687/1‑76 (MQ=255)
aaaaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGaa < 2:4674632/76‑1 (MQ=255)
aaaaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGaa < 2:1840615/76‑1 (MQ=255)
aaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAg > 2:6072998/1‑76 (MQ=255)
aaaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAg > 2:951650/1‑76 (MQ=255)
aaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAgg < 2:2766406/76‑1 (MQ=255)
aaaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAgg < 2:194115/76‑1 (MQ=255)
aaaGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAgg > 2:4398861/1‑76 (MQ=255)
aaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAGGt > 2:5082721/1‑76 (MQ=255)
aaGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAGGt > 1:5909931/1‑76 (MQ=255)
aGGGCGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAGGtt < 2:1985135/76‑1 (MQ=255)
|
ATTTTCATCTTTGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGATAAAAAAGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGACCCCTGATATACGACAACAAGGAAAGGTT > REL606/1505068‑1505213
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
