Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,577,214 |
T→C |
intergenic (‑37/+21) |
pepB ← / ← yfhJ |
aminopeptidase B/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,577,214 | 0 | T | C | 99.1%
| 852.8
/ ‑2.6
| 214 | intergenic (‑37/+21) | pepB/yfhJ | aminopeptidase B/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (142/70); total (144/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.30e-01 |
Only 100 of 220 total aligned reads displayed.
GTTGGGTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCTACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGATTTTCT > REL606/2577141‑2577284
|
gTTGGGTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCAc < 2:4481990/76‑1 (MQ=255)
tGGGTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCAccc > 2:1169392/1‑76 (MQ=255)
gggTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCAcccc < 2:69475/76‑1 (MQ=255)
gggTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCAcccc < 2:1065329/76‑1 (MQ=255)
gggTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCAcccc > 2:5209315/1‑76 (MQ=255)
ggTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCa < 2:3241868/76‑1 (MQ=255)
ggTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCa > 2:2576454/1‑76 (MQ=255)
tAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAgg > 2:3629583/1‑76 (MQ=255)
tAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAgg < 2:330134/76‑1 (MQ=255)
tAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAgg > 2:2825006/1‑76 (MQ=255)
tAGAGAGCGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCCCCCCAgg < 2:5235398/76‑1 (MQ=255)
agagagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGc > 1:2285254/1‑76 (MQ=255)
agagagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGc > 2:5722558/1‑76 (MQ=255)
agagagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGc > 1:4063008/1‑76 (MQ=255)
gagagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCa < 1:5527063/76‑1 (MQ=255)
gagagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCa < 2:2135407/76‑1 (MQ=255)
agagGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAg > 2:2716282/1‑76 (MQ=255)
gggTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGccc < 2:3700430/76‑1 (MQ=255)
aaTTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGttt > 2:5773021/1‑76 (MQ=255)
tttCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTatt < 2:5492048/76‑1 (MQ=255)
tttCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTatt < 2:3941575/76‑1 (MQ=255)
tttCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTatt > 1:5498917/1‑76 (MQ=255)
tttCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTatt > 1:5235694/1‑76 (MQ=255)
ttCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTattc < 2:2462251/76‑1 (MQ=255)
tCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTattca > 2:3872704/1‑76 (MQ=255)
cATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTattcat > 2:3051618/1‑76 (MQ=255)
cATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTattcat > 1:4698569/1‑76 (MQ=255)
tCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTattcattc < 1:1335299/76‑1 (MQ=255)
cGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCg > 2:4825431/1‑76 (MQ=255)
cGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCg > 1:3764076/1‑76 (MQ=255)
cGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCg > 2:2152707/1‑76 (MQ=255)
ttCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGcc < 2:800781/76‑1 (MQ=255)
tCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCt > 2:5025233/1‑76 (MQ=255)
tCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCt > 1:223852/1‑76 (MQ=255)
tCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCt > 1:648664/1‑76 (MQ=255)
cTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTc < 2:6031548/76‑1 (MQ=255)
tGTCATTTTAGTTATCCTTATTCGCTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCg > 2:1942688/1‑76 (MQ=255)
gTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGt < 2:5911582/76‑1 (MQ=255)
tCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTc > 1:167007/1‑76 (MQ=255)
tCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTc > 1:4219195/1‑76 (MQ=255)
tCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTc < 2:5315000/76‑1 (MQ=255)
cATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTcc > 1:224740/1‑76 (MQ=255)
cATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTcc > 1:5767253/1‑76 (MQ=255)
aTTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTcca > 2:4021044/1‑76 (MQ=255)
aTTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTcca < 1:1057555/76‑1 (MQ=255)
tttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagc > 1:6038488/1‑76 (MQ=255)
tttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagc > 2:1758031/1‑76 (MQ=255)
ttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcc > 1:6059534/1‑76 (MQ=255)
ttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcc > 1:1489501/1‑76 (MQ=255)
ttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcc > 1:4185018/1‑76 (MQ=255)
ttAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcc > 1:2874883/1‑76 (MQ=255)
tAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcca > 1:434529/1‑76 (MQ=255)
tAGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagcca > 1:3735762/1‑76 (MQ=255)
aGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagccag > 2:4259952/1‑76 (MQ=255)
aGTTATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTccagccag < 2:4983143/76‑1 (MQ=255)
ttATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGAc > 1:2380074/1‑76 (MQ=255)
ttATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGAc > 2:1399426/1‑76 (MQ=255)
tATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACt > 1:212029/1‑76 (MQ=255)
tATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACt > 2:1794453/1‑76 (MQ=255)
tATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACt > 1:4264486/1‑76 (MQ=255)
tATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACt > 2:1035200/1‑76 (MQ=255)
tATCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACt < 1:6163098/76‑1 (MQ=255)
aTCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTa > 2:5866287/1‑76 (MQ=255)
aTCCTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTa > 2:3192976/1‑76 (MQ=255)
cTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACa > 2:231346/1‑76 (MQ=255)
cTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACa > 2:5042689/1‑76 (MQ=255)
cTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACa > 2:2871748/1‑76 (MQ=255)
cTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACa > 1:3154117/1‑76 (MQ=255)
cTTATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACa < 1:2773696/76‑1 (MQ=255)
ttATTCGTTTAACAGCAAACCGGGCCCCCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaa < 1:480236/76‑1 (MQ=255)
ttATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaa < 1:3543947/76‑1 (MQ=255)
ttATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaa > 1:4480890/1‑76 (MQ=255)
ttttCTTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaaa < 2:6144754/74‑1 (MQ=255)
tATTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaaa < 1:752561/76‑1 (MQ=255)
aTTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaaaa < 2:223852/76‑1 (MQ=255)
aTTCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACaaaa > 1:3355660/1‑76 (MQ=255)
ttCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAAt > 1:2608946/1‑76 (MQ=255)
tCGTTTAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATc < 1:2047720/76‑1 (MQ=255)
tttAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATCCGGCCTCGTCCAGCCAGCTAAACAAAATGGCt > 2:2795799/1‑76 (MQ=255)
ttAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCtt < 2:857710/76‑1 (MQ=255)
ttAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCtt < 2:4005365/76‑1 (MQ=255)
ttAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTACAGCCAGACTAACAAAATCGCtt > 2:3558018/1‑76 (MQ=255)
tAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTc > 2:4335659/1‑76 (MQ=255)
tAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTc > 2:359132/1‑76 (MQ=255)
tAACAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTc > 2:2077035/1‑76 (MQ=255)
aaCAGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCg > 1:5593799/1‑76 (MQ=255)
aGCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAgg > 2:4593929/1‑76 (MQ=255)
gCAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGa > 2:3986255/1‑76 (MQ=255)
cAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAt > 2:1260064/1‑76 (MQ=255)
cAAAACGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAt > 2:4180199/1‑76 (MQ=255)
cAAAACGGCCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAt < 1:3415436/76‑1 (MQ=255)
aaaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAtt > 2:1900807/1‑76 (MQ=255)
aaaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAtt > 2:4758426/1‑76 (MQ=255)
aaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAttt > 1:5327276/1‑76 (MQ=255)
aaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAttt > 2:4383491/1‑76 (MQ=255)
aaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAttt < 1:3068847/76‑1 (MQ=255)
aaaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAttt > 2:2279379/1‑76 (MQ=255)
aaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAtttt < 2:6059534/76‑1 (MQ=255)
aaCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGAtttt > 2:867979/1‑76 (MQ=255)
aCGGGCCACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGATTTtc > 1:5468830/1‑76 (MQ=255)
|
GTTGGGTAGAGAGGGTAATTTTCATCGCTTCTGTCATTTTAGTTATCCTTATTCGTTTAACAGCAAAACGGGCTACCCCAGGCAGCCCGTTTATTCATTCGGCCTCGTCCAGCCAGACTAACAAAATCGCTTCGAGGATTTTCT > REL606/2577141‑2577284
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
