Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,489,214 |
T→A |
intergenic (‑8/+9) |
glpR ← / ← glpG |
DNA‑binding transcriptional repressor/predicted intramembrane serine protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,489,214 | 0 | T | A | 99.0%
| 797.6
/ ‑5.4
| 210 | intergenic (‑8/+9) | glpR/glpG | DNA‑binding transcriptional repressor/predicted intramembrane serine protease |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base A (115/92); total (116/94) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 215 total aligned reads displayed.
GGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCG > REL606/3489141‑3489286
|
tACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCt < 1:36698/76‑1 (MQ=255)
tACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCt > 2:5364633/1‑76 (MQ=255)
aCTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTg > 1:4324657/1‑76 (MQ=255)
cTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTgg > 1:5632924/1‑76 (MQ=255)
cTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTgg < 2:3724201/76‑1 (MQ=255)
tGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGa > 1:1708470/1‑76 (MQ=255)
gACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGaa < 1:3617946/76‑1 (MQ=255)
cATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAatt < 2:1526808/76‑1 (MQ=255)
tAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAattat < 2:6211886/76‑1 (MQ=255)
aCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttt > 2:756307/1‑76 (MQ=255)
aCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttt > 2:5452947/1‑76 (MQ=255)
aCCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttt < 2:2915186/76‑1 (MQ=255)
ccTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttc < 1:5944332/76‑1 (MQ=255)
ccTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttc < 2:1954612/76‑1 (MQ=255)
ctgctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcg < 2:4736239/76‑1 (MQ=255)
ctgctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcg > 1:5467550/1‑76 (MQ=255)
tgctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgt > 1:2610855/1‑76 (MQ=255)
gctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgtt > 2:2850188/1‑76 (MQ=255)
ctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttt < 1:3346648/76‑1 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttc > 2:2573485/1‑76 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttc > 1:3107271/1‑76 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttc > 2:5556798/1‑76 (MQ=255)
tttAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttcg > 2:1919238/1‑76 (MQ=255)
tttAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttcg > 1:4610468/1‑76 (MQ=255)
tttAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTAttttcgttttcg > 2:4501161/1‑76 (MQ=255)
ttAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTcgc > 1:3017049/1‑76 (MQ=255)
tAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTcgcg > 2:4009701/1‑76 (MQ=255)
tAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTcgcg < 2:3552508/76‑1 (MQ=255)
tAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTcgcg < 2:4788336/76‑1 (MQ=255)
aaCCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCgcgc > 1:339217/1‑76 (MQ=255)
aaCCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCgcgc > 2:4490568/1‑76 (MQ=255)
aCCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCa < 2:1180690/76‑1 (MQ=255)
ccAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCAt < 2:1402004/76‑1 (MQ=255)
aGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTg < 1:5248938/76‑1 (MQ=255)
aGTTCGATAATACCGTTGTGACGTTGTATTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTg > 1:3265108/1‑76 (MQ=255)
ttCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGTGCATTGAg > 2:5850651/1‑76 (MQ=255)
ttCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAg > 1:1756556/1‑76 (MQ=255)
cGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCg > 1:1194744/1‑76 (MQ=255)
cGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCg < 1:3178176/76‑1 (MQ=255)
gATAATACCGTTGTTACGGTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGa < 1:4717242/76‑1 (MQ=255)
ataataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGaa > 1:1882058/1‑76 (MQ=255)
ataataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGaa < 2:224662/76‑1 (MQ=255)
taataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 1:4465228/76‑1 (MQ=255)
taataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 2:597331/76‑1 (MQ=255)
aataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc > 1:3173612/1‑76 (MQ=255)
ataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATca < 1:1662883/76‑1 (MQ=255)
taCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaa < 1:4899259/76‑1 (MQ=255)
taCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaa > 2:6260336/1‑76 (MQ=255)
aCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaac > 2:3172115/1‑76 (MQ=255)
ccGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaaca > 1:4244566/1‑76 (MQ=255)
cGTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaacaa > 1:1725090/1‑76 (MQ=255)
gTTGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaa < 1:115668/76‑1 (MQ=255)
ttGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaaa < 2:3353345/76‑1 (MQ=255)
ttGTGACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaaa < 1:2149194/76‑1 (MQ=255)
tgtgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAg > 1:6156339/1‑76 (MQ=255)
tgtgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAg < 2:4611730/76‑1 (MQ=255)
tgtgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAg < 2:3569971/76‑1 (MQ=255)
tgtgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAg > 1:3932384/1‑76 (MQ=255)
tgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc > 1:1405005/1‑76 (MQ=255)
tgACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc > 1:2838247/1‑76 (MQ=255)
gACGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCa > 1:5337968/1‑76 (MQ=255)
aCGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAt < 1:4408047/76‑1 (MQ=255)
aCGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCAt > 1:992943/1‑76 (MQ=255)
cGTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATc < 2:3861994/76‑1 (MQ=255)
gTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCg > 2:2786568/1‑76 (MQ=255)
gTTGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCg < 1:4810808/76‑1 (MQ=255)
ttGTGTTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGc > 1:4659617/1‑76 (MQ=255)
gtgtTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTa > 2:2505093/1‑76 (MQ=255)
gtgtTTGTTTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTa < 2:3195032/76‑1 (MQ=255)
gtgtTTGTTTCATTCCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTa > 1:83253/1‑76 (MQ=255)
tgtttgttTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaa < 1:6245004/76‑1 (MQ=255)
tgtttgttTCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaa < 1:2405238/76‑1 (MQ=255)
gtttgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaaa > 1:3865270/1‑76 (MQ=255)
gtttgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTaaa > 2:1760571/1‑76 (MQ=255)
tttgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAc > 1:1290306/1‑76 (MQ=255)
tttgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAc < 2:4900711/76‑1 (MQ=255)
tttgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAc > 1:3572685/1‑76 (MQ=255)
tgtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAccc > 1:1739334/1‑76 (MQ=255)
gtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCa < 2:2103241/76‑1 (MQ=255)
gtttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCa < 2:5632924/76‑1 (MQ=255)
tttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAACCCCAc < 1:80427/76‑1 (MQ=255)
ttCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACg < 2:2693830/76‑1 (MQ=255)
tCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACgg < 2:819477/76‑1 (MQ=255)
tCATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACgg > 1:780637/1‑76 (MQ=255)
cATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGc > 1:1446240/1‑76 (MQ=255)
cATTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGc > 2:5300492/1‑76 (MQ=255)
aTTTCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCt < 1:1049312/76‑1 (MQ=255)
tttCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa > 1:6270927/1‑76 (MQ=255)
tttCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa < 2:4393297/76‑1 (MQ=255)
tttCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa > 2:3265093/1‑76 (MQ=255)
tgtCTAAAACCCTTGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa < 2:5399201/74‑1 (MQ=255)
tCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc < 1:5443038/76‑1 (MQ=255)
tCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc > 1:4192941/1‑76 (MQ=255)
tCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc > 1:2882719/1‑76 (MQ=255)
tCTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc > 2:1356745/1‑76 (MQ=255)
cTAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAcc > 1:1519629/1‑76 (MQ=255)
aaaaCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg > 2:5103902/1‑76 (MQ=255)
aaaaCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg > 2:1110869/1‑76 (MQ=255)
aaaaCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg > 1:2570645/1‑76 (MQ=255)
aaaaCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg < 1:1611919/76‑1 (MQ=255)
|
GGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCG > REL606/3489141‑3489286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
