Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A108 F1 I1 R1 80 195.1 12639756 93.3% 11792892 75.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 3,529,506 C→T A280T (GCG→ACG)  livJ ← leucine/isoleucine/valine transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6063,529,5060CT98.6% 561.0 / ‑2.2 145A280T (GCG→ACG) livJleucine/isoleucine/valine transporter subunit
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base T (87/56);  total (87/58)
Fisher's exact test for biased strand distribution p-value = 1.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

Only 100 of 155 total aligned reads displayed.

TAGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGCCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACAG  >  REL606/3529433‑3529578
                                                                         |                                                                        
tAGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTtcgtcg                                                                        <  2:5031721/76‑1 (MQ=255)
tAGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTtcgtcg                                                                        >  2:4887471/1‑76 (MQ=255)
 aGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCgg                                                                       <  2:5736659/76‑1 (MQ=255)
 aGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCgg                                                                       >  1:758979/1‑76 (MQ=255)
 aGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCgg                                                                       >  1:3271876/1‑76 (MQ=255)
 aGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCgg                                                                       <  2:3504214/76‑1 (MQ=255)
  ggtggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGa                                                                      <  1:2289669/76‑1 (MQ=255)
   gtggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGaa                                                                     <  2:6193935/76‑1 (MQ=255)
   gtggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGaa                                                                     >  1:5391093/1‑76 (MQ=255)
    tggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAAc                                                                    <  1:4786755/76‑1 (MQ=255)
    tggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAAc                                                                    <  2:3801940/76‑1 (MQ=255)
     ggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAAcc                                                                   <  1:4081186/76‑1 (MQ=255)
     ggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAAcc                                                                   <  1:5558393/76‑1 (MQ=255)
     ggtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAAcc                                                                   >  2:4342840/1‑76 (MQ=255)
      gtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCt                                                                  >  2:1083245/1‑76 (MQ=255)
      gtCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCt                                                                  >  1:6170364/1‑76 (MQ=255)
       tCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTg                                                                 <  2:3651733/76‑1 (MQ=255)
          aGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATc                                                              <  2:4848517/76‑1 (MQ=255)
          aGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATc                                                              <  1:1390978/76‑1 (MQ=255)
            aCGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGt                                                            >  2:4349470/1‑76 (MQ=255)
              gAATGCGCCTCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAg                                                          <  2:1471276/76‑1 (MQ=255)
              gAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAg                                                          >  2:4162342/1‑76 (MQ=255)
              gAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAg                                                          <  1:5839233/76‑1 (MQ=255)
              gAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAg                                                          >  1:1077206/1‑76 (MQ=255)
               aaTGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGt                                                         <  1:1088421/76‑1 (MQ=255)
               aaTGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGt                                                         <  1:1997583/76‑1 (MQ=255)
                aTGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGtt                                                        >  1:5572261/1‑76 (MQ=255)
                    gccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGttcttc                                                    <  1:1455623/76‑1 (MQ=255)
                    gccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGttcttc                                                    >  1:5875903/1‑76 (MQ=255)
                     ccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCg                                                   >  1:5776625/1‑76 (MQ=255)
                     ccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCg                                                   <  2:3775576/76‑1 (MQ=255)
                     ccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCg                                                   >  2:5837764/1‑76 (MQ=255)
                     ccgcTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCg                                                   <  1:5549391/76‑1 (MQ=255)
                        cTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCt                                                <  1:4634680/76‑1 (MQ=255)
                        cTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCt                                                >  2:300681/1‑76 (MQ=255)
                          tGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCttt                                              >  1:4327506/1‑75 (MQ=255)
                          tGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTg                                              >  1:4208203/1‑76 (MQ=255)
                          tGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTg                                              >  1:671201/1‑76 (MQ=255)
                          tGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTg                                              >  1:591434/1‑76 (MQ=255)
                           gggTGCTGGTTTTTCGCTTTGATCGCGTCAACGTTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCttct                                             >  2:2176455/1‑74 (MQ=255)
                             gTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTc                                           >  2:2874285/1‑76 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCa                                          >  2:2798227/1‑76 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCa                                          <  1:5573251/76‑1 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCa                                          <  1:3993707/76‑1 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCa                                          <  1:1254442/76‑1 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCa                                          >  2:402846/1‑76 (MQ=255)
                              tCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGGCa                                          >  2:4551697/1‑76 (MQ=255)
                               ccTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCAc                                         >  2:2422160/1‑76 (MQ=255)
                                 tGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACca                                       <  1:3133271/76‑1 (MQ=255)
                                  gTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTTGTCAcccg                                      >  1:3805740/1‑74 (MQ=255)
                                  gTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcag                                      >  2:4683007/1‑76 (MQ=255)
                                  gTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcag                                      <  1:3840897/76‑1 (MQ=255)
                                  gTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACaag                                      >  1:1169194/1‑76 (MQ=255)
                                   ttttttCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcagc                                     <  2:6136581/76‑1 (MQ=255)
                                   ttttttCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcagc                                     <  1:3607982/76‑1 (MQ=255)
                                   ttttttCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcaac                                     >  1:2472577/1‑74 (MQ=255)
                                     ttttCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcagcag                                   >  1:5919816/1‑76 (MQ=255)
                                     tttcCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACcagcag                                   <  2:1972194/76‑1 (MQ=255)
                                      tttCGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTTGTGACCagcagc                                  >  2:4416963/1‑76 (MQ=255)
                                         cGCTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCt                               <  1:3701273/76‑1 (MQ=255)
                                           cTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTc                             <  2:4518199/76‑1 (MQ=255)
                                           cTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTc                             >  1:4691455/1‑76 (MQ=255)
                                           cTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTc                             >  2:4508162/1‑76 (MQ=255)
                                           cTTTGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCCTc                             >  1:2022745/1‑76 (MQ=255)
                                            tttGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGACCtttc                            >  2:478265/1‑74 (MQ=255)
                                             ttGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCg                           <  1:3921069/76‑1 (MQ=255)
                                             ttGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCg                           <  1:6175554/76‑1 (MQ=255)
                                             ttGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCg                           >  1:4548394/1‑76 (MQ=255)
                                              tGATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGc                          >  2:1554333/1‑76 (MQ=255)
                                               gATCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCCTCCGCt                         >  1:3645048/1‑76 (MQ=255)
                                                aTCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGGCACCCGCAGCCCTTCCCCTg                        >  2:3358072/1‑76 (MQ=255)
                                                 tCGCGTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGa                       <  2:5971457/76‑1 (MQ=255)
                                                  cgcgTCAACAATGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCGCCAGCAGCCATTCACCTGAt                      >  2:2364322/1‑76 (MQ=255)
                                                         acaaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCg               <  2:6212000/76‑1 (MQ=255)
                                                          caaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCCGCAGCCCTTCCGCTGATTCGCCCGc              >  1:2800824/1‑76 (MQ=255)
                                                          caaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGc              >  2:4295113/1‑76 (MQ=255)
                                                           aaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTTGGCACCAGCAGCCCTTCCGCTGATTCGCCCCCa             >  2:159753/1‑76 (MQ=255)
                                                           aaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGcc             >  1:3487802/1‑75 (MQ=255)
                                                           aaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCa             >  1:3037697/1‑76 (MQ=255)
                                                           aaTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCCCa             >  2:1733105/1‑76 (MQ=255)
                                                            aTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCaa            <  2:2394864/76‑1 (MQ=255)
                                                            aTGGGTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGGCACCAGCAGCCCTTCCGCTGATTCGCCCGcca            >  2:565702/1‑74 (MQ=255)
                                                              gggTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATg          >  2:787725/1‑76 (MQ=255)
                                                                gTTTGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGtt        >  2:1878810/1‑76 (MQ=255)
                                                                 tttGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTa       >  1:6009191/1‑76 (MQ=255)
                                                                 tttGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTa       >  1:1371926/1‑76 (MQ=255)
                                                                  ttGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAg      >  1:6020326/1‑76 (MQ=255)
                                                                  ttGTTCGTCAGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAg      <  1:6239414/76‑1 (MQ=255)
                                                                  ttGTTCGCCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAg      <  2:6085731/76‑1 (MQ=255)
                                                                   tGTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGa     >  2:403345/1‑76 (MQ=255)
                                                                   tGTTCGTCGGAACCTGATCGTAGTTCTTCGCCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGa     <  2:3205503/76‑1 (MQ=255)
                                                                    gTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGAc    >  2:5637856/1‑76 (MQ=255)
                                                                    gTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGAc    <  2:1052116/76‑1 (MQ=255)
                                                                    gTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGAc    >  2:2309255/1‑76 (MQ=255)
                                                                    gTTCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCCCAATGTTAGAc    >  1:2448842/1‑76 (MQ=255)
                                                                     ttCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACa   >  2:533402/1‑76 (MQ=255)
                                                                     ttCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACa   <  1:2965406/76‑1 (MQ=255)
                                                                     ttCGTCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACa   <  1:4866976/76‑1 (MQ=255)
                                                                      tcgtcgGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACAg  <  2:5262866/76‑1 (MQ=255)
                                                                      tcgtcgGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACAg  <  1:1554333/76‑1 (MQ=255)
                                                                         |                                                                        
TAGGTGGTCCAGACGAATGCGCCGCTTGGGTCCTGTTTTTTCGCTTTGATCGCGTCAACAATGGGTTTGTTCGCCGGAACCTGATCGTAGTTCTTCGGCTTGGTCACCAGCAGCCCTTCCGCTGATTCGCCCGCAATGTTAGACAG  >  REL606/3529433‑3529578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A