Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A53 F1 I1 R1 17 63.8 4051746 97.3% 3942348 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 3,014,068 (AAC)3→2 coding (649‑651/1137 nt) ECB_02815 → Capsule polysaccharide export inner‑membrane protein kpsE

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3014060 3014062 3 70 [0] [0] 71 ECB_02815 Capsule polysaccharide export inner‑membrane protein kpsE

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3014063 =0 (0.000)54 (0.950) 41/134 0.3 100% coding (644/1137 nt) ECB_02815 Capsule polysaccharide export inner‑membrane protein kpsE
?REL606 = 3014059 0 (0.000)coding (640/1137 nt) ECB_02815 Capsule polysaccharide export inner‑membrane protein kpsE

GATK/CNVnator alignment

N/A