Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A112 F1 I1 R1
|
17 |
249.1 |
16570612 |
93.0% |
15410669 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,068 |
(AAC)3→2 |
coding (649‑651/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014063 = | 3 (0.010) | 291 (1.310) |
106/134 |
0.1 |
99.0% |
coding (644/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014059 |
3 (0.010) | coding (640/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
Only 100 of 354 total aligned reads displayed.
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014145‑3014063
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgttgtCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < REL606/3014059‑3013985
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACG < 2:4991643/76‑1
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTT < 1:3092061/76‑1
ATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 2:5591035/1‑76
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTC > 2:3855101/1‑76
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCT > 1:4419661/1‑76
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCT > 2:6843022/1‑76
CTTCTGCCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCT < 2:4672392/76‑1
TTCTGCCCCATCAGCGTATTCACTACCGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTT < 1:2669621/76‑1
TCTGCCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTG < 1:7276788/76‑1
CTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGA > 2:131877/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGAT > 1:6323382/1‑76
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATA > 2:5241354/1‑76
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAG < 1:6650749/76‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAG < 1:3881482/76‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAG < 1:4020138/76‑1
CCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGA > 2:6500006/1‑76
ATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGA < 1:5008785/76‑1
TCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAG < 1:2254746/76‑1
TCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAG < 1:6531354/76‑1
CAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGC > 1:8071955/1‑76
AGCGTATTCCCTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCA < 2:5966665/76‑1
AGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCA < 2:836075/76‑1
GCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAA < 1:987965/76‑1
CGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAAT > 2:4030110/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATT > 2:7600359/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATT < 2:7467588/76‑1
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTC < 2:6798758/76‑1
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCC > 1:363083/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCC > 1:5531674/1‑76
TCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGC > 2:2089831/1‑76
CACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCT > 2:1114573/1‑76
ACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTT < 1:7681692/76‑1
ACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTT > 2:731850/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT > 2:628762/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:5258344/76‑1
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 2:6970705/76‑1
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:3778342/76‑1
TAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG < 1:864622/76‑1
ACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 1:23419/1‑76
CGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTG < 1:2896790/76‑1
TGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGC > 1:4939413/1‑76
GCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCG > 2:225427/1‑76
GCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCG > 1:3930369/1‑76
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCa > 2:5822053/1‑75
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC < 1:2481688/76‑1
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:1186404/1‑76
CCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAG < 1:3556206/76‑1
CCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAG < 1:6810924/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 2:2405754/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 1:4099624/76‑1
CCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACG > 1:5836649/1‑76
TGTGCCTGTGCCTGTGGATCCATAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT > 1:3341484/1‑76
TGTGCCTGTGCCTGTGGATCCATAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT > 1:6929678/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT < 2:6082726/76‑1
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT > 1:5942631/1‑76
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG > 1:446284/1‑76
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 2:7738867/76‑1
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 1:743398/76‑1
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 1:6081023/76‑1
TGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG > 2:4385570/1‑76
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 1:827557/1‑76
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 2:4802617/1‑76
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 1:101061/1‑76
CCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 2:6538961/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 1:2012008/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 2:1762697/76‑1
TGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG > 1:7892654/1‑76
TGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:3484024/76‑1
GCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCT > 1:1836668/1‑76
CCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTT > 2:5317876/1‑76
CCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTT < 2:1565973/76‑1
CCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTT > 2:1708849/1‑76
CTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT > 1:1416855/1‑76
CTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT > 2:4296304/1‑76
CTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT > 2:4157616/1‑76
TGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTT < 1:5314886/76‑1
GTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTC > 2:1856452/1‑76
GTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTC < 1:6262152/76‑1
TGGATCCAGAACGTTATTGTCTTGATAAGAGAGCAATTACGCTTTGCTGGCGTCCAGACGCTGGCGTGCTTTTTCC > 2:6168249/1‑76
GATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCCTTTCCAT > 2:3156765/1‑76
ATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATC > 2:2857667/1‑76
ATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATC > 2:3532193/1‑76
ATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATC > 2:7123688/1‑76
TCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCT < 1:1316471/76‑1
TCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCT > 1:1659094/1‑76
AGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCG < 2:4622770/76‑1
GAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGT < 2:3775075/76‑1
GAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGT > 2:3016394/1‑76
TTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTG < 2:5153658/76‑1
TTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTG > 1:1586443/1‑76
TTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTG > 2:2534103/1‑76
TGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGC > 1:2620230/1‑76
TGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGC > 1:5198229/1‑76
TGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGC < 2:7849346/76‑1
TGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTTCATCTCCGTTTCTGCAAA > 1:4612234/1‑76
TGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAA < 2:8069259/76‑1
TGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAA > 1:4314356/1‑76
GTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAG < 1:3445341/76‑1
GTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAG < 1:4842275/76‑1
TCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < 2:6662588/76‑1
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014145‑3014063
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgttgtCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < REL606/3014059‑3013985
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
