Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A64 F1 I1 R1
|
17 |
58.5 |
3743480 |
96.8% |
3623688 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,068 |
(AAC)3→2 |
coding (649‑651/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014063 = | 2 (0.030) | 60 (1.150) |
49/134 |
0.1 |
96.9% |
coding (644/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014059 |
2 (0.040) | coding (640/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
ATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014144‑3014063
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgttgtCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < REL606/3014059‑3013985
ATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGT > 2:1682551/1‑76
TGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGT > 2:12828/1‑76
TGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGT < 1:1562969/76‑1
GATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTG < 1:490747/76‑1
ATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:629971/1‑76
TTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTT < 2:1717607/76‑1
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTG < 2:1033561/76‑1
CTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGA > 2:1776758/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGAT < 1:533741/76‑1
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATA > 1:1353385/1‑76
GCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAA < 2:852034/76‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAG > 1:1100381/1‑76
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAG < 2:1152661/76‑1
CATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAG < 2:1186723/76‑1
CAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGC < 1:38679/76‑1
AGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCA > 1:687452/1‑76
AGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCA < 1:1860340/76‑1
CGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAAT > 2:776892/1‑76
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTC > 2:1734681/1‑76
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTC > 2:1340229/1‑76
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTC > 1:812254/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCC > 1:1744489/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCC > 1:530288/1‑76
CACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCT > 1:834839/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:303002/76‑1
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT > 1:687650/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 2:877473/76‑1
TAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG > 1:49484/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGC > 2:1356390/1‑76
CGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTG < 2:1215765/76‑1
CTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGT > 1:1813766/1‑76
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:503107/1‑76
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:1367043/1‑76
CGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:1359703/1‑76
GCCGCATGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 2:708279/76‑1
CCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAG > 2:248397/1‑76
CGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA > 1:628081/1‑76
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC > 1:137012/1‑76
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC > 1:1563008/1‑76
CCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACG < 1:268341/76‑1
CCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACG > 2:1167981/1‑76
CTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGC > 1:214888/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT < 2:530288/76‑1
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT < 2:1744489/76‑1
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 1:623198/76‑1
TGCCTGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG < 2:335939/76‑1
TGTGCCTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG > 1:1394375/1‑76
CTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT > 1:1494388/1‑76
CTGTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT > 2:364252/1‑76
GTGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTC > 2:402824/1‑76
TGGATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCC > 2:1471618/1‑76
GATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCAT > 1:615922/1‑76
GATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCAT < 2:453362/76‑1
GATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCAT < 1:1476152/76‑1
ATCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATC > 2:1109988/1‑76
TCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCT < 1:171806/76‑1
TCCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCCTTTTCCTCT > 1:719761/1‑76
CCAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCCTTTCCCTCTC > 2:1080860/1‑76
CAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCC > 2:747761/1‑76
CAGAACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCC > 2:361345/1‑76
CAGAACGTTGTTGTCTTGATAAGAGAGCAATGCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCC < 2:301662/76‑1
AACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTT > 1:240755/1‑76
ACGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTTCATCTCCCTTT > 1:1720354/1‑76
CGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTC > 1:1013302/1‑76
CGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTC < 2:385791/76‑1
TGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGC > 1:1577520/1‑76
GTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCA > 2:299753/1‑76
GTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCA > 2:1788892/1‑76
TTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAA > 1:583136/1‑76
GTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAG < 2:238825/76‑1
GTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAG < 1:1143672/76‑1
TCTTGATAAGAGAGCCATTCCGCTTTGCGGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < 1:1834721/76‑1
TCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG > 2:347926/1‑76
TCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG > 1:227469/1‑76
ATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014144‑3014063
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgttgtCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTTCCATCTCCGTTTCTGCAAAGG < REL606/3014059‑3013985
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
