Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A53 F1 I1 R1
|
17 |
63.8 |
4051746 |
97.3% |
3942348 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,228,513 |
Δ46 bp |
coding (12‑57/861 nt) |
yraL ← |
predicted methyltransferase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3228513 |
3228558 |
46 |
64 [0] |
[2] 66 |
yraL |
predicted methyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3228512 | 0 (0.000) | 47 (0.840) |
35/132 |
0.6 |
97.9% |
coding (58/861 nt) |
yraL |
predicted methyltransferase |
| ? | REL606 |
3228559 = |
2 (0.040) | coding (11/861 nt) |
yraL |
predicted methyltransferase |
GATK/CNVnator alignment
N/A
