Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,228,601 |
Δ557 bp |
|
[yraM] |
[yraM] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3228601 |
3229157 |
557 |
274 [2] |
[3] 276 |
[yraM] |
[yraM] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3228600 | 2 (0.010) | 236 (1.080) |
99/134 |
0.1 |
99.0% |
intergenic (‑31/‑34) |
yraL/yraM |
predicted methyltransferase/hypothetical protein |
| ? | REL606 |
3229158 = |
3 (0.010) | coding (525/2037 nt) |
yraM |
hypothetical protein |
GATK/CNVnator alignment
N/A
