Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A136 F1 I1 R1
|
21 |
250.8 |
15742942 |
95.7% |
15065995 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,911,972 |
(T)7→8 |
intergenic (‑173/‑150) |
yifB ← / → ilvL |
predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,911,965 | 1 | . | T | 98.5%
| 569.1
/ 0.7
| 132 | intergenic (‑166/‑157) | yifB/ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (30/100); total (30/102) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.63e-01 |
Only 100 of 160 total aligned reads displayed.
GAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑TTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAA > REL606/3911891‑3912035
|
gAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑t < 1:3254467/76‑1 (MQ=255)
gAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑t > 1:4842098/1‑76 (MQ=255)
aaTGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATCCTGAAATTGAA‑tt > 2:4145052/1‑76 (MQ=255)
aaTGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tt > 1:4840386/1‑76 (MQ=255)
atgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑ttt < 1:4080152/76‑1 (MQ=255)
atgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑ttt < 2:4012745/76‑1 (MQ=255)
tgatgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttt < 1:92934/76‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttttt < 1:356164/76‑1 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttttt > 2:3821267/1‑76 (MQ=255)
atgCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttttt > 1:7393329/1‑76 (MQ=255)
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTTAA‑tttttttt < 2:7211224/76‑2 (MQ=255)
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttttttt > 2:6666120/1‑75 (MQ=255)
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑tttttttt < 1:4144335/76‑2 (MQ=255)
cTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑ttttttttc < 1:6758459/76‑3 (MQ=255)
cTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑ttttttttc < 2:5320391/76‑3 (MQ=255)
tCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑ttttttttca < 1:7021603/76‑4 (MQ=255)
cAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactc < 1:967113/76‑1 (MQ=255)
cAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactc < 1:6087993/76‑1 (MQ=255)
cAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactc > 1:4607944/1‑76 (MQ=255)
cAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactc < 1:4555087/76‑1 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactca > 2:2817707/1‑76 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactca < 2:3089032/76‑1 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactca > 1:4276260/1‑76 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactca > 1:1053659/1‑76 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtcactca < 1:1515275/76‑1 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACta < 2:7652978/76‑1 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACta < 1:3275348/76‑1 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACta < 1:7784167/76‑1 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACta > 2:6177194/1‑76 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACta < 1:1866120/76‑1 (MQ=255)
aTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑TTTTTTTCACTCACtatt < 2:667385/76‑1 (MQ=255)
tGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑TTTTTTTCACTCACtattt < 1:6589937/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt < 2:4337393/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt < 2:6002096/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt < 2:3755311/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt < 2:2754570/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt < 2:2110674/76‑1 (MQ=255)
gCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattt > 2:1371598/1‑76 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtatttt < 2:5917706/76‑1 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtatttt > 2:1298249/1‑76 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtatttt < 1:4801004/76‑1 (MQ=255)
aGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtatttta < 1:381867/76‑1 (MQ=255)
aGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtatttta < 1:4863554/76‑1 (MQ=255)
gCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattttat < 1:4036763/76‑1 (MQ=255)
cGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattttatt < 1:3143781/76‑1 (MQ=255)
ggACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattttattt < 2:4182611/76‑1 (MQ=255)
ggACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACtattttattt < 1:2798753/76‑1 (MQ=255)
aCAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTAttttt < 2:7486275/76‑1 (MQ=255)
aCAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTAttttt < 2:2662125/76‑1 (MQ=255)
cAAAGGATAAACTACGAGGAAGGGACCAACATTCATACTGAAATTGAT‑TTTTTTTCACTCACTATTTTATTTTTaa < 2:5558217/76‑1 (MQ=255)
aaaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTaa < 2:195498/76‑1 (MQ=255)
aaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTaaa < 2:486875/76‑1 (MQ=255)
aGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTaaaa < 1:74034/76‑1 (MQ=255)
aGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTaaaa < 1:3800117/76‑1 (MQ=255)
aGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTaaaa < 1:5104126/76‑1 (MQ=255)
aTGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaac > 1:2702822/1‑76 (MQ=255)
tGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaaca < 1:7792812/76‑1 (MQ=255)
tGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaaca > 2:1734846/1‑76 (MQ=255)
tGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaaca < 2:1463077/76‑1 (MQ=255)
tGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaaca < 2:6117484/76‑1 (MQ=255)
gAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaacaa < 2:4543866/76‑1 (MQ=255)
gAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAaacaa < 1:1031169/76‑1 (MQ=255)
aCTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAacaaca < 1:5695853/76‑1 (MQ=255)
aCTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAacaaca < 2:1625393/76‑1 (MQ=255)
aCTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAacaaca < 1:5479263/76‑1 (MQ=255)
cTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAAcaacaa < 2:1089915/76‑1 (MQ=255)
cTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAAcaacaa < 1:2421604/76‑1 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAAt > 2:3507236/1‑76 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAAt < 2:5902428/76‑1 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAAt < 1:6988482/76‑1 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAAt > 1:5979166/1‑76 (MQ=255)
cGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAAttt < 2:2588270/76‑1 (MQ=255)
aGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTtat < 1:759953/76‑1 (MQ=255)
ggAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTtata < 1:2887356/76‑1 (MQ=255)
gAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTatat < 1:2974050/76‑1 (MQ=255)
gAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTatat < 2:255528/76‑1 (MQ=255)
gAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTatat < 1:2615345/76‑1 (MQ=255)
gggAACAACATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGa < 1:5274224/76‑1 (MQ=255)
aacaacATTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAat > 1:3154159/1‑76 (MQ=255)
acaacaTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 2:3947025/76‑1 (MQ=255)
acaacaTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 2:6586652/76‑1 (MQ=255)
acaacaTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 1:1735770/76‑1 (MQ=255)
aacaTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAattat > 2:3177123/1‑76 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 1:2209938/76‑1 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 1:6421951/76‑1 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 1:7500968/76‑1 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 1:5535388/76‑1 (MQ=255)
aTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTaa > 1:7259309/1‑76 (MQ=255)
aTTCATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTaa > 1:1897944/1‑76 (MQ=255)
cATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACg > 1:5966924/1‑76 (MQ=255)
cATACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACg < 1:7568204/76‑1 (MQ=255)
tACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGca > 2:6354731/1‑76 (MQ=255)
tACTGAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGca < 1:2549703/76‑1 (MQ=255)
gAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat < 1:5191392/76‑1 (MQ=255)
gAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat > 2:563838/1‑76 (MQ=255)
gAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat < 1:4894215/76‑1 (MQ=255)
gAAATTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat < 1:3400042/76‑1 (MQ=255)
aTTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa > 1:6029785/1‑76 (MQ=255)
aTTGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa < 1:2567511/76‑1 (MQ=255)
ttGAATTTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaaa < 2:6928012/76‑1 (MQ=255)
|
GAATGATGCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA‑TTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAA > REL606/3911891‑3912035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
