Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A42 F1 I1 R1
|
17 |
53.4 |
3386926 |
97.4% |
3298865 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,326,715 |
+AAT |
coding (52/489 nt) |
mreD ← |
cell wall structural complex MreBCD transmembrane component MreD |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3326712 | 0 (0.000) | 51 (1.000)
+AAT |
40/138 |
0.2 |
100% |
coding (55/489 nt) |
mreD |
cell wall structural complex MreBCD transmembrane component MreD |
| ? | REL606 |
3326713 = |
0 (0.000) | coding (54/489 nt) |
mreD |
cell wall structural complex MreBCD transmembrane component MreD |
CAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3326638‑3326712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGCGCACG > REL606/3326713‑3326786
|||
CAAGATGAGTAACACCCAGTTTGGCCAGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCA < 1:947742/76‑1
AAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAA > 2:1427535/1‑76
GATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATA < 1:1378207/76‑1
GAGTACCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATG < 2:975050/76‑1
AGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGA < 2:117557/76‑1
GTAACCCCCAGTTTGGCCGGAAAACAATCAGGTTAGCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAG < 1:628370/76‑1
GTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAG < 2:1037306/76‑1
TAACACCCAGTTGGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGG < 1:1454339/76‑1
cCCCAGTTTGGCCGGAAAACAATCAGTTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAG < 1:913440/75‑1
CCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGA > 1:988363/1‑76
ttgGGCGGGAAAAAAATCAGGTTACCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCC < 1:775976/73‑1
TTTGGCCGGAAAACAATCAGTTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCC < 2:216103/76‑1
TTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCC < 2:216088/76‑1
TGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAG > 2:938069/1‑76
TGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAG > 1:526003/1‑76
TGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAACAACAGCGCAATAATGAGGAAAGAGAGCCAG > 1:990863/1‑76
CCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATT < 2:721896/76‑1
AAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCC < 1:1207934/76‑1
AAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCC > 1:1224732/1‑76
AACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAG > 2:151530/1‑76
ATCGGGTTATCCGGCGAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTC < 1:1476496/76‑1
ATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTC > 1:394497/1‑76
TCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCC < 2:346768/76‑1
TCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCC > 1:331680/1‑76
CAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCC > 2:820533/1‑76
AGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCT < 2:1379656/76‑1
TTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGC > 2:801495/1‑76
ATCCGGCCAGGGCATGATTTGNCGCAGCAGCGCAATAACGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTA < 2:272277/76‑1
ATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTA < 1:1676146/76‑1
CGGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGA > 1:873611/1‑76
GGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGAT < 2:443712/76‑1
GGCCAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGAT < 2:318055/76‑1
cgAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAG < 1:576157/74‑1
CAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGC > 2:943375/1‑76
CAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGC > 2:1046371/1‑76
CAGGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGC > 2:1235843/1‑76
GGGCATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCCACGACAGCTC > 1:659679/1‑76
CATGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCC > 2:1563424/1‑76
TGATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCAC > 1:1321424/1‑76
GATTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACT < 2:1268401/76‑1
TTTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTAT > 2:1334556/1‑76
TTGCAGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATT < 2:1163949/76‑1
AGCAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCC < 1:225648/76‑1
CAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTC > 2:719285/1‑76
CAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTC > 2:85141/1‑76
CAACAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTC < 2:1274137/76‑1
AACAGCGCAATAATGAGGAAAGNGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCC > 2:231091/1‑76
CAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCG < 2:1681882/76‑1
CAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCG > 2:1054455/1‑76
CAGCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCG > 2:1445194/1‑76
GCGCAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGC < 2:364486/76‑1
CGCAATAATGAGGAAAGAGACCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGCG < 1:237746/76‑1
CAATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGCGCA > 1:105015/1‑76
ATAATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGCGCACG < 1:484245/76‑1
|||
CAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3326638‑3326712
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGAGGAAAGAGAGCCAGATTACCCAGCGTCCCTGGCTACGATAGCTCGCCACTATTGCCCTCCCGGCGCACG > REL606/3326713‑3326786
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
