Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A70 F1 I1 R1
|
18 |
48.6 |
3152226 |
95.8% |
3019832 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
2,904,110 |
(GTC)4→3 |
coding (2297‑2299/3099 nt) |
ygfK → |
predicted oxidoreductase, Fe‑S subunit |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
2904101 |
2904103 |
3 |
44 [0] |
[0] 45 |
ygfK |
predicted oxidoreductase, Fe‑S subunit |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2904104 = | 0 (0.000) | 41 (0.960) |
29/132 |
0.4 |
100% |
coding (2291/3099 nt) |
ygfK |
predicted oxidoreductase, Fe‑S subunit |
| ? | REL606 |
= 2904100 |
0 (0.000) | coding (2287/3099 nt) |
ygfK |
predicted oxidoreductase, Fe‑S subunit |
GATK/CNVnator alignment
N/A
