Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A70 F1 I1 R1
|
18 |
48.6 |
3152226 |
95.8% |
3019832 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,154,953 |
T→A |
intergenic (‑316/‑46) |
coaA ← / → thrU |
pantothenate kinase/tRNA‑Thr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,154,953 | 0 | T | A | 100.0%
| 143.5
/ NA
| 35 | intergenic (‑316/‑46) | coaA/thrU | pantothenate kinase/tRNA‑Thr |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (23/12); total (23/12) |
TCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCA > REL606/4154880‑4155024
|
tCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAg < 1:621537/76‑1 (MQ=255)
tGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGtt > 2:625129/1‑76 (MQ=255)
gCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTg > 2:696475/1‑76 (MQ=255)
gCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTg < 2:633893/76‑1 (MQ=255)
cccTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGc > 1:153722/1‑76 (MQ=255)
tCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATg < 1:270094/76‑1 (MQ=255)
gTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAAc > 1:564723/1‑76 (MQ=255)
gTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAAc < 2:141205/76‑1 (MQ=255)
gTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAAc > 1:169950/1‑76 (MQ=255)
tCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTc > 2:1065746/1‑76 (MQ=255)
tGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATg > 1:568433/1‑76 (MQ=255)
gTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGt > 1:670029/1‑76 (MQ=255)
ttcttcATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGtct < 2:865520/76‑1 (MQ=255)
cGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGaa > 2:739263/1‑76 (MQ=255)
gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAAt < 2:626847/76‑1 (MQ=255)
tgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATg > 2:65273/1‑76 (MQ=255)
gtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATgc < 1:1536868/76‑1 (MQ=255)
cGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATgcgc < 1:758172/76‑1 (MQ=255)
cATAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATgcgcgc > 1:153702/1‑76 (MQ=255)
tAAAATGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTa < 2:88123/76‑1 (MQ=255)
aaaaTGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTAc > 1:679750/1‑76 (MQ=255)
aaaaTGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTAc > 1:978533/1‑76 (MQ=255)
aTGTGACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTg > 2:656289/1‑76 (MQ=255)
tgtgACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGa > 1:1430388/1‑76 (MQ=255)
gACCAATAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGc > 1:1477911/1‑76 (MQ=255)
aaTAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGAc > 1:798374/1‑76 (MQ=255)
aTAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACt > 1:1010363/1‑76 (MQ=255)
tAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACtt > 2:1008850/1‑76 (MQ=255)
tAAAACAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACtt > 2:219517/1‑76 (MQ=255)
aaaCAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAg < 2:494959/76‑1 (MQ=255)
aaaCAAATTATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAg < 2:955956/76‑1 (MQ=255)
ttATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAgta > 2:477804/1‑76 (MQ=255)
ttATGCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAgta > 1:796280/1‑76 (MQ=255)
gCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAgtaggta > 2:298008/1‑76 (MQ=255)
gCAATTTTTAAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAgtaggta < 2:1182758/76‑1 (MQ=255)
tttttaAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGc > 2:571418/1‑76 (MQ=255)
tttttaAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGc < 1:1432896/76‑1 (MQ=255)
ttttaAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCa > 1:275906/1‑76 (MQ=255)
|
TCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCA > REL606/4154880‑4155024
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
