Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A34 F1 I1 R1
|
18 |
56.1 |
3547650 |
96.9% |
3437672 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,995,676 |
(C)8→7 |
intergenic (+103/+351) |
yeeN → / ← asnW |
hypothetical protein/tRNA‑Asn |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,995,669 | 0 | C | . | 95.3%
| 291.3
/ 9.7
| 64 | intergenic (+96/+358) | yeeN/asnW | hypothetical protein/tRNA‑Asn |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base . (24/37); total (25/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
TCTTTACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCAAAG > REL606/1995594‑1995740
|
tCTTTACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAc < 1:343618/76‑1 (MQ=255)
tACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAccccc < 1:1047223/76‑1 (MQ=255)
cGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAccccccc < 2:500775/76‑1 (MQ=255)
cAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAcccccccgtt > 2:960558/1‑73 (MQ=255)
cAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAcccccccgtt > 2:1107433/1‑73 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc < 2:1596659/76‑1 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc < 1:794792/76‑1 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc < 1:794799/76‑1 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc < 2:1193953/76‑1 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc > 2:1359979/1‑76 (MQ=255)
tttCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCa < 1:1742517/76‑1 (MQ=255)
ttCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCag < 2:1690837/76‑1 (MQ=255)
ttCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCag > 1:555583/1‑76 (MQ=255)
cTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCagag > 1:1228131/1‑76 (MQ=255)
tttAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAgaga < 2:771962/76‑1 (MQ=255)
ttAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGaa < 1:844320/76‑1 (MQ=255)
ttAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGaa < 2:254051/76‑1 (MQ=255)
ttAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGaa < 1:1418431/76‑1 (MQ=255)
tAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCCGTTCCCAGAGaa > 1:123900/1‑76 (MQ=255)
aaTCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaat < 2:1555167/76‑1 (MQ=255)
aaTCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaat > 1:534651/1‑76 (MQ=255)
aTCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaata < 1:1132535/76‑1 (MQ=255)
aTCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaata < 1:1206254/76‑1 (MQ=255)
aTCTCATATAATTCTTATAAAAAATATAATATTCAAATCGTCATATTGATTATA‑CCCCCCCGTTCCCCGAGAaata > 1:470526/1‑76 (MQ=255)
tctcATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAcataa > 1:1010511/1‑76 (MQ=255)
tctcATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaataa > 1:1010532/1‑76 (MQ=255)
tctcATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaataa < 1:1091152/76‑1 (MQ=255)
atatAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatt < 2:1121211/76‑1 (MQ=255)
atatAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatt > 2:1054211/1‑76 (MQ=255)
tataATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtattt < 1:304805/76‑1 (MQ=255)
ataATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCC‑TTCCCAGAGAAATAAtattta < 2:1330075/76‑1 (MQ=255)
ataATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtattta < 2:1330067/76‑1 (MQ=255)
taATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatttat > 2:887368/1‑76 (MQ=255)
aaTTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatttatt > 1:709033/1‑76 (MQ=255)
aaTTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatttatt < 2:493297/76‑1 (MQ=255)
aaTTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAAtatttatt < 2:493294/76‑1 (MQ=255)
aTTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATttatta > 1:977970/1‑76 (MQ=255)
tCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTaaa < 1:430037/76‑1 (MQ=255)
tCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTaaa < 2:542172/76‑1 (MQ=255)
tataAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAAtt > 2:671173/1‑76 (MQ=255)
aaaaaTATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAg < 2:479950/76‑1 (MQ=255)
aaaaaTATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAg < 1:1450628/76‑1 (MQ=255)
atataatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGttct < 2:1434902/76‑1 (MQ=255)
atataatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGttct < 2:1222366/76‑1 (MQ=255)
ataatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGttcttc > 1:664916/1‑76 (MQ=255)
aatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTcttctt < 1:973743/76‑1 (MQ=255)
aatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTcttctt > 1:853623/1‑76 (MQ=255)
atatTCAACTCGTCATATTGATTATA‑CTCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCttt < 1:473870/76‑1 (MQ=255)
atatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCttt < 2:1081327/76‑1 (MQ=255)
atatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCttt < 2:750271/76‑1 (MQ=255)
atTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCttttt > 1:1503353/1‑76 (MQ=255)
tCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCt < 1:637446/76‑1 (MQ=255)
cAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTg > 1:1457550/1‑76 (MQ=255)
cAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGCTCTTCTTTTTCTg > 1:1457543/1‑76 (MQ=255)
cTCGTCATATTGATTATA‑CCCCCCCGTTCCCCGAGAAATAATATTTATTAAAATTTCAGTTCTTCTTTTTTTTAtt > 1:437815/1‑76 (MQ=255)
cTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGAtt > 1:218875/1‑76 (MQ=255)
tCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTTTTTTTCTGATTa > 1:1505114/1‑76 (MQ=255)
tCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTa < 1:615687/76‑1 (MQ=255)
tCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTa > 1:1545506/1‑76 (MQ=255)
cGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTAc > 1:1396833/1‑76 (MQ=255)
cGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTAc > 1:513679/1‑76 (MQ=255)
gTCATATTGATTATACCCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTAc < 2:1548053/76‑1 (MQ=255)
gTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACa < 1:911361/76‑1 (MQ=255)
tCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAg < 1:404305/76‑1 (MQ=255)
atatTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGaa < 1:978722/76‑1 (MQ=255)
tatTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAg < 2:587901/76‑1 (MQ=255)
gATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCaa < 2:1115479/76‑1 (MQ=255)
gATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCaa < 2:1115472/76‑1 (MQ=255)
ttATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCAAAg > 2:693447/1‑76 (MQ=255)
|
TCTTTACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCAAAG > REL606/1995594‑1995740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
