Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
18 |
29.2 |
1933165 |
95.1% |
1838439 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,995,676 |
(C)8→7 |
intergenic (+103/+351) |
yeeN → / ← asnW |
hypothetical protein/tRNA‑Asn |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,995,669 | 0 | C | . | 100.0%
| 127.9
/ NA
| 26 | intergenic (+96/+358) | yeeN/asnW | hypothetical protein/tRNA‑Asn |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (19/7); total (19/7) |
TTACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCA > REL606/1995597‑1995737
|
ttACGGCATATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTTATTATAcccc < 1:133909/76‑1 (MQ=255)
aCGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATAcccccc > 2:548756/1‑76 (MQ=255)
aTTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTccc < 1:384513/76‑1 (MQ=255)
ttCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCag > 2:144696/1‑76 (MQ=255)
tCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCaga > 1:290509/1‑76 (MQ=255)
tAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGaaa > 2:511312/1‑76 (MQ=255)
tctcATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaataa < 2:715152/76‑1 (MQ=255)
ctgatatAATTCTTATAAAAAATATANTATTCATCTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAaataat > 2:834788/4‑76 (MQ=255)
tcATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAataata > 2:705159/1‑76 (MQ=255)
cATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAatat > 1:424183/1‑76 (MQ=255)
ttATAAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAAt > 2:114656/1‑76 (MQ=255)
ataAAAAATATAATATTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTc < 1:323329/76‑1 (MQ=255)
taatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTtcttct < 1:372247/76‑1 (MQ=255)
taatatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTtcttct > 2:689315/1‑76 (MQ=255)
tatTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCtttt > 1:316991/1‑76 (MQ=255)
atTCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCttttt > 2:769431/1‑76 (MQ=255)
tCAACTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTTTTCttttttt > 1:282173/1‑74 (MQ=255)
tCAACTCGTCATATTGATCATA‑CCCCCCCGTTCCCAGAGAAATAATACATATTAAAATTCCAGTTCTTCTTTTTCt > 2:872000/1‑76 (MQ=255)
aaCTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGa > 1:919942/1‑76 (MQ=255)
aaCTCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGa > 1:394296/1‑76 (MQ=255)
aatCGTCCTATTGATTATA‑CCCCCCCGTTCCCCNAGACATCATCTTTATTAAAATTCNAGTTCTTCTTTTTCTGAt > 2:101137/3‑76 (MQ=255)
tCGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTa > 1:314777/1‑76 (MQ=255)
cGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTAc > 1:771478/1‑76 (MQ=255)
cGTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTAc < 1:348897/76‑1 (MQ=255)
gTCATATTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACa > 1:559988/1‑76 (MQ=255)
tatTGATTATA‑CCCCCCCGTTCTCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAg < 2:919941/76‑1 (MQ=255)
tatTGATTATA‑CCCCCCCGTTCCCAGCGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAg > 1:852952/1‑76 (MQ=255)
tatTGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAg < 2:394296/76‑1 (MQ=255)
tGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAANTTCCAGATCTTCTTTTTCTGATTACAGAAGGCa > 1:778438/1‑76 (MQ=255)
tGATTATA‑CCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCa > 1:408354/1‑76 (MQ=255)
|
TTACGGCAGATTTCTTTAATCTCATATAATTCTTATAAAAAATATAATATTCAACTCGTCATATTGATTATACCCCCCCCGTTCCCAGAGAAATAATATTTATTAAAATTCCAGTTCTTCTTTTTCTGATTACAGAAGGCA > REL606/1995597‑1995737
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
