Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A122 F1 I1 R1
|
27 |
151.2 |
10056804 |
92.4% |
9292486 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,843,787 |
Δ54 bp |
coding (251‑304/1404 nt) |
dnaA ← |
chromosomal replication initiation protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3843787 |
3843840 |
54 |
134 [6] |
[1] 131 |
dnaA |
chromosomal replication initiation protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3843786 | 6 (0.040) | 104 (0.790) |
58/132 |
0.8 |
97.1% |
coding (305/1404 nt) |
dnaA |
chromosomal replication initiation protein |
| ? | REL606 |
3843841 = |
1 (0.010) | coding (250/1404 nt) |
dnaA |
chromosomal replication initiation protein |
GATK/CNVnator alignment
N/A
