Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A133 F1 I1 R1
|
21 |
238.6 |
15028552 |
95.5% |
14352267 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,571,413 |
G→T |
intergenic (+179/‑139) |
uspA → / → yhiP |
universal stress global response regulator/predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,571,413 | 0 | G | T | 99.5%
| 899.7
/ ‑3.2
| 213 | intergenic (+179/‑139) | uspA/yhiP | universal stress global response regulator/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (105/107); total (106/107) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 |
Only 100 of 218 total aligned reads displayed.
CTGCGTTCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAGCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTA > REL606/3571340‑3571485
|
cTGCTTTCAAAATAAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAgag < 2:6664443/76‑3 (MQ=255)
cTGCGTTCGCAATCAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCt < 1:6045452/76‑1 (MQ=255)
tGCTTTCGCAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTg < 2:5356128/76‑1 (MQ=255)
ggggTTCCCAATCAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTg < 2:1384019/73‑1 (MQ=255)
ccGTCCGCAATCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTgg < 1:6100596/75‑1 (MQ=255)
gTTCGCAATCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGtt < 2:4589933/76‑1 (MQ=255)
gTTCGCAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGtt < 1:1995491/76‑1 (MQ=255)
ttCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTa > 1:3263798/1‑76 (MQ=255)
cGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtt > 1:4859917/1‑76 (MQ=255)
cGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtt > 1:3755239/1‑76 (MQ=255)
cAATAAAAACCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 1:3182091/76‑1 (MQ=255)
aaaTCAAACCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 1:6945685/75‑1 (MQ=255)
acAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg < 2:7480506/75‑1 (MQ=255)
aaaaaaCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg < 2:6255396/74‑1 (MQ=255)
aaaaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgt < 2:1309776/75‑1 (MQ=255)
aaaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgtt > 2:7214/1‑76 (MQ=255)
aaaaCCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgtt < 2:6528460/76‑1 (MQ=255)
aaaTCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgttg > 2:5464608/1‑76 (MQ=255)
acccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTa < 1:2279472/74‑1 (MQ=255)
cccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTaa < 2:5029399/75‑1 (MQ=255)
ccccaAGCCAATACAATATTTATACCCTCCTTTTTTTCCATCA‑TAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:5067532/75‑1 (MQ=255)
ccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:7258263/76‑1 (MQ=255)
ccccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 1:7305216/76‑1 (MQ=255)
cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:6655012/76‑1 (MQ=255)
cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa > 2:3184132/1‑76 (MQ=255)
cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:1597163/76‑1 (MQ=255)
cccAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:7020623/76‑1 (MQ=255)
cAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgt < 2:2628582/76‑1 (MQ=255)
gCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgtgt < 1:5437830/76‑1 (MQ=255)
ccAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTa > 2:4226283/1‑76 (MQ=255)
caatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAt > 2:2049665/1‑76 (MQ=255)
caatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAt > 1:174863/1‑76 (MQ=255)
aatacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAtt < 2:7077547/76‑1 (MQ=255)
atacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTa < 1:2918653/76‑1 (MQ=255)
atacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTa > 1:2796829/1‑76 (MQ=255)
tacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTaa < 1:5876603/76‑1 (MQ=255)
tacaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTaa > 2:5658200/1‑76 (MQ=255)
acaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAAt < 2:4978708/76‑1 (MQ=255)
acaataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAAt < 1:7126656/76‑1 (MQ=255)
caataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATc > 2:2462079/1‑76 (MQ=255)
caataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATc > 1:20501/1‑76 (MQ=255)
aataTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCt < 2:4799203/76‑1 (MQ=255)
atatTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTa < 1:6471469/76‑1 (MQ=255)
tatTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAt > 1:5980690/1‑76 (MQ=255)
atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt > 1:5654320/1‑76 (MQ=255)
atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt < 2:1626547/76‑1 (MQ=255)
atTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAtt > 1:1478000/1‑76 (MQ=255)
tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 1:1161686/1‑76 (MQ=255)
tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 1:94396/1‑76 (MQ=255)
tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc > 2:5941994/1‑76 (MQ=255)
tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTc < 1:6641109/76‑1 (MQ=255)
ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa > 2:7018198/1‑76 (MQ=255)
ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa > 1:4239289/1‑76 (MQ=255)
ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa < 2:3845476/76‑1 (MQ=255)
tAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAc < 1:1895929/76‑1 (MQ=255)
caaCACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAc > 2:7294482/2‑76 (MQ=255)
aaCACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAcc > 2:6226424/1‑76 (MQ=255)
cacCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGc < 2:5135923/76‑1 (MQ=255)
acCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCa < 2:4151949/76‑1 (MQ=255)
ccATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCAt < 1:4926054/76‑1 (MQ=255)
atcatATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCa > 1:3453290/1‑76 (MQ=255)
catATTTTCCGTCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 2:2760583/76‑1 (MQ=255)
catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 1:3404737/76‑1 (MQ=255)
catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat < 1:6779265/76‑1 (MQ=255)
catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAat > 1:6272168/1‑76 (MQ=255)
atatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata < 1:3701390/76‑1 (MQ=255)
atatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata > 1:5799313/1‑76 (MQ=255)
tatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAatat < 1:5357433/76‑1 (MQ=255)
tatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAatat < 2:1040128/76‑1 (MQ=255)
atTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATAtt > 1:7150494/1‑76 (MQ=255)
ttttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTa < 1:1089101/76‑1 (MQ=255)
ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 1:4112838/1‑76 (MQ=255)
ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg < 1:2513868/76‑1 (MQ=255)
ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 1:3680852/1‑76 (MQ=255)
ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 2:1713269/1‑76 (MQ=255)
ttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAg > 2:3611582/1‑76 (MQ=255)
tCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGa > 2:4034135/1‑76 (MQ=255)
ccATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 1:1194058/1‑76 (MQ=255)
ccATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 2:1888109/1‑76 (MQ=255)
catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 2:4330677/76‑1 (MQ=255)
catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 1:2180377/76‑1 (MQ=255)
catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAt < 2:4833526/76‑1 (MQ=255)
tcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtct < 1:2366624/76‑1 (MQ=255)
tcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtct > 1:4775535/1‑76 (MQ=255)
catTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtctc < 2:1817381/76‑1 (MQ=255)
atTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATctct < 1:6621700/76‑1 (MQ=255)
tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa < 1:3045545/76‑1 (MQ=255)
tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa > 2:4716353/1‑76 (MQ=255)
tAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa < 2:3519782/76‑1 (MQ=255)
aGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGAc > 1:4406620/1‑76 (MQ=255)
aGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGAc > 1:4198594/1‑76 (MQ=255)
tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 1:2975947/1‑76 (MQ=255)
tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg < 2:6751562/76‑1 (MQ=255)
tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 1:4829857/1‑76 (MQ=255)
tgtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAg > 2:2286555/1‑76 (MQ=255)
tgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt > 1:4649411/1‑76 (MQ=255)
tgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt > 2:6196064/1‑76 (MQ=255)
gATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATg > 1:7461477/1‑76 (MQ=255)
atcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGt < 1:7486101/76‑1 (MQ=255)
atcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGt > 2:4471363/1‑76 (MQ=255)
|
CTGCGTTCGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCAGCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTA > REL606/3571340‑3571485
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
