mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 473,924 | A→C | V461G (GTC→GGC) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 548,535 | T→A | intergenic (‑257/‑332) | nmpC ← / → ybcR | outer membrane porin, at locus of qsr prophage; b0553_1/predicted phage lysis protein |
| RA | 649,601 | T→C | I401V (ATC→GTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 1,136,082 | T→G | intergenic (‑23/+51) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydroorotase |
| RA | 1,305,509 | T→G | D244A (GAC→GCC) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| JC | 2,103,915 | (CCAG)7→6 | coding (182‑185/216 nt) | ECB_01992 → | hypothetical protein |
| RA | 2,164,917 | A→C | S309A (TCG→GCG) | yehU ← | predicted sensory kinase in two‑component system with YehT |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,762,213 | T→G | Y67S (TAT→TCT) | rpoS ← | RNA polymerase sigma factor |
| RA | 3,027,164 | (A)6→5 | coding (507/660 nt) | ECB_02827 ← | Polysialic acid transport ATP‑binding KpsT |
| RA | 3,489,365 | Δ1 bp | coding (689/831 nt) | glpG ← | predicted intramembrane serine protease |
| RA | 3,571,413 | G→T | intergenic (+179/‑139) | uspA → / → yhiP | universal stress global response regulator/predicted transporter |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,911,972 | (T)7→8 | intergenic (‑173/‑150) | yifB ← / → ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
| RA | 4,163,752 | T→G | I966S (ATC→AGC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,202,635 | T→C | intergenic (‑76/‑124) | iclR ← / → metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |