Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F1 I1 R1
|
17 |
44.7 |
2849266 |
96.8% |
2758089 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,577,728 |
(GCTGGA)2→3 |
coding (740/1353 nt) |
gor → |
glutathione reductase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3577717 = | 2 (0.040) | 40 (0.980) |
33/138 |
0.3 |
97.8% |
coding (729/1353 nt) |
gor |
glutathione reductase |
| ? | REL606 |
= 3577722 |
0 (0.000) | coding (734/1353 nt) |
gor |
glutathione reductase |
GTTGTCATTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3577795‑3577717
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGCCTTC < REL606/3577722‑3577649
GTTGTCATTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCC < 2:344807/76‑1
TTGTCATTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCA < 2:634344/76‑1
TGTCATTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAG < 2:269342/76‑1
TTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCA > 2:168291/1‑76
TTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCA < 2:149640/76‑1
GGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGC > 1:983250/1‑76
CAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGT > 2:1150966/1‑76
AGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTC > 2:802711/1‑76
AGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTC < 2:1376337/76‑1
GGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCA < 1:1160670/76‑1
GCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAG < 1:767314/76‑1
CTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGG < 2:527689/76‑1
CGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCT > 2:978705/1‑76
CGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCT > 2:747717/1‑76
CGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCT > 2:472999/1‑76
CGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCT > 2:546175/1‑76
GCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTA < 1:1061381/76‑1
GCGACCAATCGCCCAAATCAGGCAATCCACCGNTTGACTGCNACCATATTCCAGCTCCAGCNCCAGCGTCAGGCTA > 2:1182463/1‑76
CGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTAC > 2:530981/1‑76
CCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCAT < 2:399747/76‑1
CCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTT < 2:628679/76‑1
CCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTT > 2:717634/1‑76
AAATCAGGCAATCCACCGTTTCACTGCGTCCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTT < 2:149716/76‑1
AAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGCCAGGCTACCATCGGCATTTTT < 2:149710/76‑1
GCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACC < 2:716021/76‑1
CAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCG > 2:267166/1‑76
CCACCGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTT < 1:775807/76‑1
CACCGTTTCNCTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTC > 1:33596/1‑76
CGTTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGG < 2:546609/76‑1
TTTCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGAT < 1:1166334/76‑1
TCACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCACTTGTCACTACCGCTTTCGGGATGG > 1:1343977/1‑76
CACTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGC > 1:639964/1‑76
CTGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGT > 2:952735/1‑76
gGCGACCGTCTCCCAGCTCCGCCGCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATTGCGTT < 2:450736/75‑1
TGCGACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTT < 1:1190187/76‑1
GACCATCTTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGT < 1:454132/76‑1
CTTCCAGCTCCAGCTCCAGCGTCAGTCTACCATCGGCATTNNTCACTACCGCNNTTGGGATGGCGTTGGTGTGCAG > 1:1280993/1‑76
TTCCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCANTANCGCTTTCGGGATGGNGTTGGTGTGCAGC > 2:1281283/1‑76
CCAGCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTG > 2:84429/1‑76
GCTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGG > 2:991921/1‑76
CTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGG > 2:745572/1‑76
CTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGG > 2:947511/1‑76
CTCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGG > 2:656048/1‑76
TCCAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGC < 2:374349/76‑1
CAGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGCCT < 1:680740/76‑1
AGCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGCCTT < 2:846313/76‑1
GCTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGCCTTC < 2:12591/76‑1
GTTGTCATTGGCAGGCTCGCGACCAATCGCCCAAATCAGGCAATCCACCGTTTCACTGCGACCATCTTCCAGCTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3577795‑3577717
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcTCCAGCGTCAGGCTACCATCGGCATTTTTCACTACCGCTTTCGGGATGGCGTTGGTGTGCAGCTGCGGGCCTTC < REL606/3577722‑3577649
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
