Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F1 I1 R1
|
16 |
38.1 |
2332770 |
98.7% |
2302443 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,912,872 |
Δ5 bp |
coding (513‑517/1647 nt) |
ilvG → |
acetolactate synthase II, valine insensitive, large subunit |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3912872 |
3912876 |
5 |
30 [0] |
[0] 32 |
ilvG |
acetolactate synthase II, valine insensitive, large subunit |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3912871 | 0 (0.000) | 30 (0.790) |
24/150 |
0.7 |
100% |
coding (512/1647 nt) |
ilvG |
acetolactate synthase II, valine insensitive, large subunit |
| ? | REL606 |
3912877 = |
0 (0.000) | coding (518/1647 nt) |
ilvG |
acetolactate synthase II, valine insensitive, large subunit |
GATK/CNVnator alignment
N/A
