Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A47 F1 I1 R1
|
17 |
69.1 |
4502028 |
96.3% |
4335452 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,816,986 |
A→T |
intergenic (+385/‑172) |
ygdH → / → sdaC |
hypothetical protein/predicted serine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,816,986 | 0 | A | T | 97.5%
| 306.7
/ ‑0.5
| 79 | intergenic (+385/‑172) | ygdH/sdaC | hypothetical protein/predicted serine transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base T (34/43); total (34/45) |
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 |
ATTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTA > REL606/2816912‑2817058
|
aTTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGAt < 2:1110886/76‑1 (MQ=255)
ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:727048/76‑1 (MQ=255)
ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa > 1:196264/1‑76 (MQ=255)
ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:1695913/76‑1 (MQ=255)
ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:1337376/76‑1 (MQ=255)
cttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGa > 2:446419/1‑76 (MQ=255)
cttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGa > 1:1234623/1‑76 (MQ=255)
ttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGAt < 1:1127674/76‑1 (MQ=255)
ttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGAt < 2:1707327/76‑1 (MQ=255)
ttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCa > 2:1377513/1‑76 (MQ=255)
ttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCa < 2:1543473/76‑1 (MQ=255)
cttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTg > 1:362368/1‑76 (MQ=255)
ttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTga > 2:1959556/1‑76 (MQ=255)
ttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTga > 2:292221/1‑76 (MQ=255)
tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat > 1:634312/1‑76 (MQ=255)
tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat < 2:1022685/76‑1 (MQ=255)
tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat > 1:2246766/1‑76 (MQ=255)
ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata < 2:1436143/76‑1 (MQ=255)
ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata < 2:1523393/76‑1 (MQ=255)
ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata > 2:2233364/1‑76 (MQ=255)
taATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgatag > 1:1722402/1‑76 (MQ=255)
ttACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATAc < 1:116409/76‑1 (MQ=255)
tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACa > 1:1317777/1‑76 (MQ=255)
tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACa < 1:666839/76‑1 (MQ=255)
aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt < 1:325579/76‑1 (MQ=255)
aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt > 1:416729/1‑76 (MQ=255)
aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt > 1:517257/1‑76 (MQ=255)
aCAGAGGAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt < 1:1540175/76‑1 (MQ=255)
cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATa < 2:217928/76‑1 (MQ=255)
agagTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATaa < 2:379509/76‑1 (MQ=255)
tAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtg > 1:1576353/1‑76 (MQ=255)
tAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtg > 2:219876/1‑76 (MQ=255)
aaGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtg < 2:1115825/76‑1 (MQ=255)
aaGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtg < 2:927595/76‑1 (MQ=255)
aGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtgt > 1:1798426/1‑76 (MQ=255)
ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:678263/1‑76 (MQ=255)
ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:1569501/1‑76 (MQ=255)
ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:1848032/1‑76 (MQ=255)
ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:571420/1‑76 (MQ=255)
gggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCt < 1:839535/76‑1 (MQ=255)
ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 2:905811/76‑1 (MQ=255)
ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 1:119762/76‑1 (MQ=255)
ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 1:1226928/76‑1 (MQ=255)
gATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCttt < 2:1699162/76‑1 (MQ=255)
aTAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTc < 2:84493/76‑1 (MQ=255)
aaTCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCg < 2:193916/76‑1 (MQ=255)
aaTCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCg < 2:1461211/76‑1 (MQ=255)
ctatctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGccc > 1:2024729/1‑76 (MQ=255)
tatctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCt < 1:999971/76‑1 (MQ=255)
atctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc > 1:981404/1‑76 (MQ=255)
atctTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc < 1:2091480/76‑1 (MQ=255)
tctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCa < 1:108326/76‑1 (MQ=255)
ttCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaaa < 2:441264/76‑1 (MQ=255)
ttCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaaa > 2:1403672/1‑76 (MQ=255)
tCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat < 2:483263/76‑1 (MQ=255)
tCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat > 1:36798/1‑76 (MQ=255)
ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1753996/76‑1 (MQ=255)
ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:2105383/76‑1 (MQ=255)
ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1640841/76‑1 (MQ=255)
ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:2217810/76‑1 (MQ=255)
ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1068752/76‑1 (MQ=255)
cAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatta > 1:1181066/1‑76 (MQ=255)
aaGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat > 2:911796/1‑76 (MQ=255)
aaGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat < 1:19117/76‑1 (MQ=255)
aGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattatt < 2:2198249/76‑1 (MQ=255)
tAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAc > 2:2139104/1‑76 (MQ=255)
tAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAc > 2:1050356/1‑76 (MQ=255)
aGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg < 2:510161/76‑1 (MQ=255)
gATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcgg < 1:301491/76‑1 (MQ=255)
ttattGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcggcg > 1:221743/1‑76 (MQ=255)
attGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGt > 1:596245/1‑76 (MQ=255)
ttGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTa > 1:1351448/1‑76 (MQ=255)
ttGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTa < 2:1502236/76‑1 (MQ=255)
gTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTaaa > 1:690669/1‑76 (MQ=255)
aTTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATg > 1:1366276/1‑76 (MQ=255)
tttGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGa < 2:1291974/76‑1 (MQ=255)
gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 2:46499/76‑1 (MQ=255)
gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 2:491384/76‑1 (MQ=255)
gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 1:1307576/76‑1 (MQ=255)
|
ATTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTA > REL606/2816912‑2817058
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
