breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	430,835	C→T	intergenic (‑48/‑108)	insL‑2 ← / → lon	putative transposase insL for insertion sequence IS186/DNA‑binding ATP‑dependent protease La
RA	475,302	Δ1 bp	coding (4/1677 nt)	ybaL ←	predicted transporter with NAD(P)‑binding Rossmann‑fold domain
RA	648,086	T→G	E271A (GAG→GCG)	mrdB ←	cell wall shape‑determining protein
RA	1,305,551	A→T	I230N (ATC→AAC)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	1,886,204	G→A	intergenic (‑34/+635)	yobF ← / ← yebO	hypothetical protein/hypothetical protein
RA	1,994,856	A→C	intergenic (+342/‑1)	amn → / → yeeN	AMP nucleosidase/hypothetical protein
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,816,986	A→T	intergenic (+385/‑172)	ygdH → / → sdaC	hypothetical protein/predicted serine transporter
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	4,161,145	G→T	R97L (CGC→CTC)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	4,163,028	C→A	Q725K (CAG→AAG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	4,471,518	T→A	I325N (ATC→AAC)	yjgQ →	conserved inner membrane protein
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)