Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F1 I1 R1
|
21 |
57.1 |
3643130 |
97.0% |
3533836 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,414,656 |
A→C |
*211S (TAA→TCA) |
crp → |
DNA‑binding transcriptional dual regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,414,656 | 0 | A | C | 100.0%
| 299.2
/ NA
| 71 | *211S (TAA→TCA) | crp | DNA‑binding transcriptional dual regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (40/31); total (40/31) |
ATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTAT > REL606/3414583‑3414728
|
aTTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCAt < 1:1337806/76‑1 (MQ=255)
ttCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATc > 2:108205/1‑76 (MQ=255)
gAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGt > 1:1512075/1‑76 (MQ=255)
gAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGt > 2:343912/1‑76 (MQ=255)
gAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGt > 2:1586923/1‑76 (MQ=255)
aaGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTc < 2:746712/76‑1 (MQ=255)
gATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCgg > 2:1381077/1‑76 (MQ=255)
aTGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGa > 2:1343931/1‑76 (MQ=255)
aTGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGa < 2:219728/76‑1 (MQ=255)
tGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAg > 2:1569735/1‑76 (MQ=255)
cTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTg > 2:1753331/1‑76 (MQ=255)
tGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTgg > 1:1296756/1‑76 (MQ=255)
tGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTgg > 2:1219593/1‑76 (MQ=255)
aaGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGgcgc > 1:871839/1‑76 (MQ=255)
aTCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGtt < 1:983836/76‑1 (MQ=255)
tCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTa < 1:1631224/76‑1 (MQ=255)
cAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTAc < 1:1441300/76‑1 (MQ=255)
ccTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGt > 2:569209/1‑76 (MQ=255)
ccTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGt > 1:1645959/1‑76 (MQ=255)
cTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTa < 2:871816/76‑1 (MQ=255)
tGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGCGTGGCGCGTTACCTGGCAg > 2:1562959/1‑76 (MQ=255)
tGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAg < 2:986848/76‑1 (MQ=255)
tGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAg < 1:743704/76‑1 (MQ=255)
tGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAg < 1:563086/76‑1 (MQ=255)
aTCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAgcg > 2:701155/1‑76 (MQ=255)
aTCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAgcg > 2:1627785/1‑76 (MQ=255)
tctcCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAgcgc > 2:384648/1‑76 (MQ=255)
ctcCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAgcgcg > 2:18956/1‑76 (MQ=255)
ccGCCCACGGTAAAACCGTCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGcc < 1:273198/76‑1 (MQ=255)
ccGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGcc > 2:107660/1‑76 (MQ=255)
ccGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGcc > 2:814662/1‑76 (MQ=255)
ccGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGcc > 2:1310626/1‑76 (MQ=255)
ccGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGcc > 2:1753953/1‑76 (MQ=255)
cacaCGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAtt > 2:624690/1‑76 (MQ=255)
acacGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAttt < 2:545495/76‑1 (MQ=255)
cacGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAtttt < 1:384648/76‑1 (MQ=255)
cacGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAtttt < 2:1664743/76‑1 (MQ=255)
cacGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAtttt < 2:1764299/76‑1 (MQ=255)
cacGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCAtttt < 2:1813828/76‑1 (MQ=255)
acGGTAAAACCATCGTCGTTTACGGCACTCTTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTg < 2:876315/76‑1 (MQ=255)
acGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTg < 2:353967/76‑1 (MQ=255)
acGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTg < 2:1584664/76‑1 (MQ=255)
cGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTCGCGCGCCCTTTTGt > 1:1659183/1‑76 (MQ=255)
cGGTAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGCTCCCTGGGAGCGGGCCATTTTGt > 1:1572582/1‑76 (MQ=255)
tAAAACCATCGTCGTTTACGGCACTCGTTCATCCCGCCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTc < 2:1267689/76‑1 (MQ=255)
aaaaCCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGGTTCCTGGGAGCGCGCCCCTtttttttc > 1:962108/1‑74 (MQ=255)
aaaaCCATCGTCGTTTACGGCACTCGTTCATCCCGTCAGAGTGGCGCGTAACCTNGTAGCGCGCCATTTTGTTTcc > 2:289840/1‑76 (MQ=255)
aaaCCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTccc > 2:1306506/1‑76 (MQ=255)
aaaCCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTccc > 1:1674132/1‑76 (MQ=255)
aaCCATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTcccc < 1:1126111/76‑1 (MQ=255)
ccATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCg < 2:518701/76‑1 (MQ=255)
cATCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGAAGCGCGCCATTTTGTTTCCCTCgt > 2:1381200/1‑75 (MQ=255)
aTCGTCGTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGAt > 2:1004263/1‑76 (MQ=255)
tcgtcgTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGAtg < 2:1562646/76‑1 (MQ=255)
tcgtcgTTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGAtg < 2:830813/76‑1 (MQ=255)
cgtcgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCACCGAtgt > 2:1448208/1‑76 (MQ=255)
gtcgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCCTTTTGTTTCCCCCGAtgtg > 2:1115207/1‑76 (MQ=255)
gtcgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGAtgtg > 2:1307300/1‑76 (MQ=255)
gtcgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGAtgtg > 2:589809/1‑76 (MQ=255)
tcgtGTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTgg < 1:485972/76‑1 (MQ=255)
cgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGgc < 2:226665/76‑1 (MQ=255)
cgtTTACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGgc > 1:1358834/1‑76 (MQ=255)
tttACGGCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCCTTTTGTTTCCCCCGATGTGgcgc > 1:1074696/1‑76 (MQ=255)
gCACTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTg < 2:1578751/76‑1 (MQ=255)
aCTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTTCCCCGATGTGGGGCAGACTggt > 1:905479/1‑74 (MQ=255)
cTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGAtt < 1:776643/76‑1 (MQ=255)
cTCGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGAtt < 2:1401447/76‑1 (MQ=255)
cGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGCCTGATTTa > 2:1122524/1‑76 (MQ=255)
cGTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTa < 2:1688456/76‑1 (MQ=255)
gTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTAt > 2:432889/1‑76 (MQ=255)
gTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTAt > 2:863940/1‑76 (MQ=255)
gTTCATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTAt < 2:337841/76‑1 (MQ=255)
|
ATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTAT > REL606/3414583‑3414728
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
