«

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A134 F1 I1 R1	15	220.5	13917488	95.6%	13305118	76.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	2,032,893	Δ21,285 bp		[manC]–[wcaJ]	21 genes [manC], insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	2032893	2054177	21285	187 [4]	[1] 182	[manC]–[wcaJ]	[manC],insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2032892	4 (0.020)	173 (0.810)	102/148	0.2	98.6%	coding (1364/1425 nt)	manC	Mannose‑1‑phosphate guanylyltransferase
*	?	REL606	2054178 =	1 (0.000)	173 (0.810)	102/148	0.2	98.6%	coding (494/1395 nt)	wcaJ	predicted UDP‑glucose lipid carrier transferase

GATK/CNVnator alignment

N/A