Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A134 F1 I1 R1
|
15 |
220.5 |
13917488 |
95.6% |
13305118 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,927,357 |
(T)8→9 |
coding (74/1266 nt) |
rhlB ← |
ATP‑dependent RNA helicase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,927,349 | 1 | . | T | 96.5%
| 565.1
/ 11.7
| 142 | coding (82/1266 nt) | rhlB | ATP‑dependent RNA helicase |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base T (47/89); total (49/93) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 |
Only 100 of 162 total aligned reads displayed.
CCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑TTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATG > REL606/3927274‑3927418
|
ccTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAAccc > 2:4726524/1‑76 (MQ=255)
ccTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAAccc > 2:1029955/1‑76 (MQ=255)
gCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑ttt > 1:826125/1‑76 (MQ=255)
gCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑ttt > 1:1690810/1‑76 (MQ=255)
cgggCTACGCCCCGCCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑ttttt < 1:56693/74‑1 (MQ=255)
ccGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑ttttt > 2:14466/1‑76 (MQ=255)
ggCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑ttttttt > 1:2722596/1‑76 (MQ=255)
gCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑tttttttt > 2:6881423/1‑76 (MQ=255)
gCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGGGCCTGAATGGGCGTACAGTTATG‑AAACCC‑tttttttt > 1:2268145/1‑76 (MQ=255)
tCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAgg > 2:1572634/1‑76 (MQ=255)
tCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAgg > 2:1749747/1‑76 (MQ=255)
cACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAAACCT‑TTTTTTTTCAAggg > 1:1247065/1‑76 (MQ=255)
ccccccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCt < 2:4025700/73‑1 (MQ=255)
cccccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCtt < 2:2354830/74‑1 (MQ=255)
cccccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCta < 2:3971746/74‑2 (MQ=255)
aCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTc > 2:2143215/1‑76 (MQ=255)
cccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCt < 1:1064308/76‑1 (MQ=255)
ccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTa < 2:1900192/76‑1 (MQ=255)
gCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACa < 2:5085468/76‑1 (MQ=255)
gCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACa < 2:510326/76‑1 (MQ=255)
ccAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACaa < 2:2262610/76‑1 (MQ=255)
cAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAAc > 2:2638942/1‑76 (MQ=255)
cAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAAc < 1:517334/76‑1 (MQ=255)
cAGCGTCAGCGGAAGGCCCAGTGCCTGAATGGGCGTACAGTTATG‑AATCCCTTTTTTTTTCAAGGGCTTCTACAAc < 2:6154789/76‑1 (MQ=255)
cGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAAACtt > 2:4145097/1‑76 (MQ=255)
gTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTc > 2:4904631/1‑76 (MQ=255)
gTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTc > 1:4101571/1‑76 (MQ=255)
tCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCg < 1:1876138/76‑1 (MQ=255)
tCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCg > 1:6423533/1‑76 (MQ=255)
cAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCgg < 2:1012590/76‑1 (MQ=255)
cAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCgg < 2:3825800/76‑1 (MQ=255)
aGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGa < 1:5604075/76‑1 (MQ=255)
gCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACACCCTTCGGAt < 2:5659088/76‑1 (MQ=255)
gggaGGTCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGc < 2:1394253/73‑1 (MQ=255)
ggAGGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGc < 1:2005197/76‑1 (MQ=255)
ggAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGc < 2:4494453/76‑1 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCa < 2:1191547/76‑1 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCa > 1:5489984/1‑76 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCa < 2:3299789/76‑1 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAgg < 1:1885667/76‑1 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAgg < 1:4575610/76‑1 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAgg < 2:2691419/76‑1 (MQ=255)
gggCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAggg < 2:888097/76‑1 (MQ=255)
gggCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAggg < 1:1275123/76‑1 (MQ=255)
cAGTGCCTGAATGGTCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGaa < 1:5073691/76‑1 (MQ=255)
cAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGGGaa > 2:5553053/1‑76 (MQ=255)
cAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGaa > 2:2888618/1‑76 (MQ=255)
cAGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGaa < 2:2484588/76‑1 (MQ=255)
aGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAg > 1:1734752/1‑76 (MQ=255)
aGTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAg < 1:4732517/76‑1 (MQ=255)
gTGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGt < 1:2693407/76‑1 (MQ=255)
tGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTc > 2:6274746/1‑76 (MQ=255)
tGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTc > 1:1516060/1‑76 (MQ=255)
tGCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTc > 2:5466860/1‑76 (MQ=255)
gCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg > 1:2713994/1‑76 (MQ=255)
gCCTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg < 1:4168953/76‑1 (MQ=255)
ccTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCgg < 2:3676847/76‑1 (MQ=255)
ccTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCgg > 2:6258846/1‑76 (MQ=255)
cTGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGa < 2:1286026/76‑1 (MQ=255)
tGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaa < 2:6653896/76‑1 (MQ=255)
tGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaa < 2:3438725/76‑1 (MQ=255)
tGAATGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaa > 2:2078688/1‑76 (MQ=255)
aaTGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaaaa < 2:275933/76‑1 (MQ=255)
aaTGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaaaa < 1:2223642/76‑1 (MQ=255)
aaTGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGaaaa > 1:3559064/1‑76 (MQ=255)
aTGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAAc > 1:5010223/1‑76 (MQ=255)
tGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACt < 2:4673766/76‑1 (MQ=255)
tGGGCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACt > 2:160501/1‑76 (MQ=255)
ggCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttc < 2:4978776/76‑1 (MQ=255)
gCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttct < 2:5991761/76‑1 (MQ=255)
gCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttct < 2:4358048/76‑1 (MQ=255)
gCGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttct < 1:6704039/76‑1 (MQ=255)
cGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctg < 1:1132328/76‑1 (MQ=255)
cGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctg < 2:2359255/76‑1 (MQ=255)
cGTACAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctg > 2:1747090/1‑76 (MQ=255)
aCAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttc > 2:3395256/1‑76 (MQ=255)
cAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttct > 1:3067462/1‑76 (MQ=255)
cAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttct < 2:26814/76‑1 (MQ=255)
cAGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttct < 2:1943232/76‑1 (MQ=255)
aGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttctg > 1:3679409/1‑76 (MQ=255)
aGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttctg < 1:3525456/76‑1 (MQ=255)
aGTTATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACttctgttctg < 1:6175280/76‑1 (MQ=255)
ttATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTctgttctgtt > 1:6735496/1‑76 (MQ=255)
ttATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTctgttctgtt < 2:3245579/76‑1 (MQ=255)
ttATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTctgttctgtt > 2:6177573/1‑76 (MQ=255)
ttATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTctgttctgtt > 1:6021642/1‑76 (MQ=255)
ttATG‑AAACCC‑TTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTa > 1:379397/1‑76 (MQ=255)
tATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTa < 1:776003/76‑1 (MQ=255)
tATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTa > 1:6019594/1‑76 (MQ=255)
tATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTa < 2:4804169/76‑1 (MQ=255)
tATG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTa > 2:4439175/1‑76 (MQ=255)
aTG‑AACCCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaa < 1:2101468/76‑1 (MQ=255)
aTG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaa < 1:4195170/76‑1 (MQ=255)
aTG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaa < 1:6515065/76‑1 (MQ=255)
aTG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaa < 2:733425/76‑1 (MQ=255)
tG‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaaa > 1:2556708/1‑76 (MQ=255)
g‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAt > 1:6227012/1‑76 (MQ=255)
g‑AAACCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAt < 2:3759323/76‑1 (MQ=255)
aaaCCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtg < 1:5929398/76‑1 (MQ=255)
aaaCCCTTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtg > 2:1955837/1‑76 (MQ=255)
|
CCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATG‑AAACCC‑TTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATG > REL606/3927274‑3927418
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A