Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F1 I1 R1
|
17 |
44.7 |
2849266 |
96.8% |
2758089 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,373,769 |
C→T |
G93S (GGT→AGT) |
rplF ← |
50S ribosomal protein L6 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,373,769 | 0 | C | T | 100.0%
| 212.8
/ NA
| 54 | G93S (GGT→AGT) | rplF | 50S ribosomal protein L6 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/30); total (24/30) |
GCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACCTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTCAGCAGGGCACG > REL606/3373697‑3373841
|
gCTGATTGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCAGATTGCCTTTAACCGCTGCACGGTAACTTac < 1:1300365/76‑1 (MQ=255)
gCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTac < 1:1153881/76‑1 (MQ=255)
tGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTacac < 1:901269/76‑1 (MQ=255)
tGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTacac > 1:584480/1‑76 (MQ=255)
tCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACaccaacca > 2:113280/1‑76 (MQ=255)
tCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACaccaacca < 1:307823/76‑1 (MQ=255)
cAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAg > 1:509119/1‑76 (MQ=255)
cAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAg < 1:213539/76‑1 (MQ=255)
aaCAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGc > 1:385481/1‑76 (MQ=255)
aCAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCt < 1:865775/76‑1 (MQ=255)
cAGGATGAGAGAAACCCAGAGCCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTg < 1:1342007/76‑1 (MQ=255)
cAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTg > 2:966627/1‑76 (MQ=255)
aGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGc > 1:5770/1‑76 (MQ=255)
aGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGc < 1:1241604/76‑1 (MQ=255)
agaAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACANCAACCAGCTGCAGcttctt < 1:1321077/76‑1 (MQ=255)
agaAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGcttctt < 2:707059/76‑1 (MQ=255)
agaAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGcttctt < 1:481008/76‑1 (MQ=255)
gaAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTa > 2:113323/1‑76 (MQ=255)
aaCCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGt < 1:353407/76‑1 (MQ=255)
aCCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTg < 1:381436/76‑1 (MQ=255)
ccAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGaa < 2:891662/76‑1 (MQ=255)
cAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAg > 1:774055/1‑76 (MQ=255)
gagaCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGcc < 2:458618/76‑1 (MQ=255)
agaCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCt > 2:528942/1‑76 (MQ=255)
gaCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCtt < 2:1148289/76‑1 (MQ=255)
gaCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCtt < 2:863538/76‑1 (MQ=255)
gaCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCtt > 2:999983/1‑76 (MQ=255)
aCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTc > 1:1093958/1‑76 (MQ=255)
aCAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTc > 1:214070/1‑76 (MQ=255)
cAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTATACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCg < 2:586218/76‑1 (MQ=255)
aGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCgg > 2:101476/1‑76 (MQ=255)
gTTAATCACATTGCCTTTCACTGCTGCACGGTAACTTACACCAACCAGCGGCAGCTTCTGAGTGAAGCCTTCGGTa < 1:1339695/76‑1 (MQ=255)
ttAATCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACAAGCTGCAGCTTCTTAGTGAAGCCTTCGGTaa > 2:870136/1‑76 (MQ=255)
aaTCACATTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGATTCTTAGTGAAGCCTTCGGTAaca > 1:1336751/1‑76 (MQ=255)
cacaTTGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCg < 2:169630/76‑1 (MQ=255)
ttGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATaa > 2:909862/1‑76 (MQ=255)
ttGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATaa < 1:646713/76‑1 (MQ=255)
ttGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATaa > 2:836473/1‑76 (MQ=255)
tGCCTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAAc < 1:255459/76‑1 (MQ=255)
ccTTTAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCa > 1:792520/1‑76 (MQ=255)
cTTTAACCGCTGNACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCAt > 1:17251/1‑76 (MQ=255)
ttAACCGCTGCACGGTAACTTACACCAACCAGNTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCNTTg > 2:1323742/1‑76 (MQ=255)
ttAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTg < 2:427896/76‑1 (MQ=255)
ttAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTg < 1:56586/76‑1 (MQ=255)
tAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGa < 2:1262648/76‑1 (MQ=255)
tAACCGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGa > 2:989297/1‑76 (MQ=255)
ccGCTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGtt > 2:840101/1‑76 (MQ=255)
cTGNACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAGCACCGATAACCATTGAGTTtag < 2:1289371/76‑1 (MQ=255)
cTGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTcag < 1:277367/76‑1 (MQ=255)
tGCACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTcagc > 1:1046624/1‑76 (MQ=255)
cACGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTcagcag < 1:714523/76‑1 (MQ=255)
cGGTAACTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTCAGCAggg < 1:5014/76‑1 (MQ=255)
gTAACTTACACCAACCCGCTGCAGCTGCTTAGTGAAGCCTTCGGTAACACCCATTACTATTGAGTCCAGCAGGGCa > 1:1334581/1‑76 (MQ=255)
aaCTTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACNGATAACCATTGAGTTCAGCAGGGCAcg < 1:1421971/76‑1 (MQ=255)
|
GCTGATGGTCAACAGGATGAGAGAAACCCAGAGACAGGTTAATCACATTGCCTTTAACCGCTGCACGGTAACCTACACCAACCAGCTGCAGCTTCTTAGTGAAGCCTTCGGTAACACCGATAACCATTGAGTTCAGCAGGGCACG > REL606/3373697‑3373841
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
