Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A92 F1 I1 R1
|
15 |
58.2 |
3997918 |
96.1% |
3841999 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,228,283 |
G→T |
P96Q (CCG→CAG) |
yraL ← |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,228,283 | 0 | G | T | 100.0%
| 180.1
/ NA
| 45 | P96Q (CCG→CAG) | yraL | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (20/25); total (20/25) |
GTAGCGGCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCGGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCAGCTTTT > REL606/3228212‑3228354
|
ntAGCGGCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGt > 1:1038790/2‑76 (MQ=255)
tAGCGGCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGtt < 2:912509/76‑1 (MQ=255)
aGCGGCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTc < 1:1379647/76‑1 (MQ=255)
ggCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCgg > 2:1826636/1‑76 (MQ=255)
accacGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCAt < 2:1921720/76‑1 (MQ=255)
cacGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCg < 1:903882/76‑1 (MQ=255)
acGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCgg < 1:1546084/76‑1 (MQ=255)
cgcgGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTACGGCATCGGa > 2:1393628/1‑76 (MQ=255)
gcgGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGaa < 2:421524/76‑1 (MQ=255)
gcgGATCCCCGCTTCACGGCAGGTACGCACCAGATGGGAGCCAGGATCGTTAATTAGCTGCGGTCCGGCATCGGaa > 2:1198975/1‑76 (MQ=255)
cgGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGaan < 1:1915768/76‑2 (MQ=255)
cgGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGaaa < 2:1508991/76‑1 (MQ=255)
ggATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAAc < 2:278679/76‑1 (MQ=255)
ggATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAAc < 1:1634273/76‑1 (MQ=255)
ggATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAAc < 1:998925/76‑1 (MQ=255)
tCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAg > 2:442264/1‑76 (MQ=255)
ccGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAgcgc < 1:424718/76‑1 (MQ=255)
ccGCTTCACGGCAGGGACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAgcgc > 2:790645/1‑76 (MQ=255)
cGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCa < 1:956017/76‑1 (MQ=255)
cGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCa > 2:1268078/1‑76 (MQ=255)
ctccACGGCAGGTACGCGCCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAAt < 2:1530013/73‑1 (MQ=255)
cTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAAt > 2:1403079/1‑76 (MQ=255)
ttCACGGCAGGTCCGCCCCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCaaag < 2:1115543/76‑3 (MQ=255)
cGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGtttt > 2:1578419/1‑76 (MQ=255)
cGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGtttt < 1:1215832/76‑1 (MQ=255)
gCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGc < 1:1053912/76‑1 (MQ=255)
aGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGccc > 1:918806/1‑76 (MQ=255)
ggTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGcccc < 2:519130/76‑1 (MQ=255)
cGCACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCtt > 2:786487/1‑76 (MQ=255)
cACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGc < 2:150524/76‑1 (MQ=255)
cACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGc > 1:821242/1‑76 (MQ=255)
cACCAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGc > 2:167239/1‑76 (MQ=255)
cAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGc > 1:500619/1‑76 (MQ=255)
cAGATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGc > 1:347385/1‑76 (MQ=255)
gATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCtt > 1:1883621/1‑76 (MQ=255)
gATGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCtt < 2:517233/76‑1 (MQ=255)
aTGGTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTc < 2:84593/76‑1 (MQ=255)
gTAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGcc > 2:1538571/1‑76 (MQ=255)
tAGCCAGGATCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCca > 1:1455590/1‑76 (MQ=255)
aGCCAGGATCGTTACTTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCcag > 1:1061617/1‑76 (MQ=255)
aTCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGtt < 2:535124/76‑1 (MQ=255)
aTCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGtt > 2:1296103/1‑76 (MQ=255)
tCGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGttt < 2:1279248/76‑1 (MQ=255)
cGTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTc > 2:182608/1‑76 (MQ=255)
gTTAATTAGCTGCGTTCCGGCATCGGAAACCGGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCa < 2:1560142/76‑1 (MQ=255)
gTTAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCa > 2:985538/1‑76 (MQ=255)
tAATTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCAGc > 1:482438/1‑76 (MQ=255)
aTTAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCAGCtt > 2:852164/1‑76 (MQ=255)
tAGCTGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCAGCtttt < 2:1038790/76‑1 (MQ=255)
|
GTAGCGGCACCACGCGGATCCCCGCTTCACGGCAGGTACGCACCAGATGGTAGCCAGGATCGTTAATTAGCGGCGTTCCGGCATCGGAAACCAGCGCAATGTTTTGCCCCTCTTGCAGCTTCGCCAGCAGCGTTTCAGCTTTT > REL606/3228212‑3228354
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
