Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A67 F1 I1 R1
|
17 |
65.0 |
4212288 |
95.3% |
4014310 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,918 |
(CCAG)7→9 |
coding (185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103888 = | 9 (0.140) | 38 (0.850) |
30/104 |
0.4 |
92.5% |
coding (155/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103895 |
0 (0.000) | coding (162/216 nt) |
ECB_01992 |
hypothetical protein |
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103985‑2103888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctgGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < REL606/2103895‑2103822
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACGCCTGGCTGGC > 1:34695/1‑76
TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT > 2:959062/1‑76
nTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTCGCTG > 1:558820/2‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG < 1:1093877/76‑1
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 1:1982543/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:340227/1‑76
AGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCT > 1:660317/1‑76
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 1:1563745/76‑1
TTGCCTTTTATAGTATAATAAGGGAAATTATTTCGTAGTACAAAATCCACATACACACCTGGCTGGCTGGATGGCT > 2:235972/1‑76
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACTTGGCTGGCTGGCTGGCTGG > 1:1841314/1‑76
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG < 1:1073763/76‑1
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG > 1:680818/1‑76
CCTTTTATAGTATAATAGGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGC > 1:672095/1‑76
TTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGG < 1:1743240/76‑1
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGC < 1:1860491/76‑1
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT > 1:626423/1‑76
TAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGG < 2:1099596/76‑1
TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG > 1:744388/1‑76
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG < 2:1469154/76‑1
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG > 1:1284101/1‑76
TAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGC > 2:47938/1‑76
AATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCT > 1:12085/1‑76
AATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCT > 1:1531474/1‑76
ATAAGGGCAACTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG < 1:106945/76‑1
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGg > 1:860811/1‑75
GGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGT > 2:252407/1‑76
GCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTG < 1:493916/76‑1
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAA < 2:1137500/76‑1
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGTTGTGGAATCa > 2:141159/1‑75
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCT > 1:326386/1‑76
TTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCAGGCTGGCTGGCTGTGAAATCTA > 1:925166/1‑76
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGGAATCTAATG > 1:813246/1‑76
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATG > 2:1250636/1‑76
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATG > 2:1967509/1‑76
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATG < 1:1701724/76‑1
GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGC < 1:801834/76‑1
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAA > 2:1141773/1‑76
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAAT < 2:1003290/76‑1
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAAT < 1:1927500/76‑1
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAAT > 1:1930990/1‑76
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCA < 1:132645/76‑1
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCA > 2:1047339/1‑76
AATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCAC < 2:1457373/76‑1
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCT > 2:920669/1‑76
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCT > 2:1567978/1‑76
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCT > 2:2102823/1‑76
CATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 2:1518178/76‑1
ATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTA < 1:470364/76‑1
ATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTA > 2:1719373/1‑76
TCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 2:803859/76‑1
CACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCCGGGCAATCTAATGCAAATTTCCCCCCCTTCTAT > 2:1671031/1‑76
CCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGA < 2:984003/76‑1
TGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAG > 2:747265/1‑76
GGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGT < 2:876536/76‑1
GGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGT < 2:713538/76‑1
CTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA < 2:813246/76‑1
TGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAAC < 2:660317/76‑1
GGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACG < 1:747265/76‑1
TGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG < 2:363784/76‑1
GCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCA < 1:963791/76‑1
TGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGT > 2:1192181/1‑76
CTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT > 1:469863/1‑76
CTGGCTGGCTGGCTAGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT > 2:1499848/1‑76
TGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC < 1:541964/76‑1
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 2:838416/76‑1
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 2:259557/76‑1
GCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTA < 1:1141773/76‑1
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:1841314/76‑1
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 1:226035/76‑1
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103985‑2103888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctgGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < REL606/2103895‑2103822
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
