Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A57 F1 I1 R1
|
16 |
65.9 |
4148770 |
97.1% |
4028455 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,563,623 |
+GTAG |
coding (41/1014 nt) |
yfgA ← |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2563618 | 1 (0.020) | 56 (0.900)
+GGTA |
41/132 |
0.3 |
98.3% |
coding (46/1014 nt) |
yfgA |
hypothetical protein |
| ? | REL606 |
2563619 = |
1 (0.020) | coding (45/1014 nt) |
yfgA |
hypothetical protein |
TTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2563545‑2563618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTGA > REL606/2563619‑2563693
||||
TTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGG > 1:968586/1‑76
TCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGT < 2:1086989/76‑1
TCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGT < 2:1299965/76‑1
TCAGGCAAAGCCGCGCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGT < 2:548441/76‑1
CAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTA < 1:1860198/76‑1
AGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAG < 2:500996/76‑1
AGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAG > 2:1172512/1‑76
CAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTA > 2:1206069/1‑76
AGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTA > 2:313762/1‑76
AGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTA > 2:1337935/1‑76
CGCTCGGCAACGGTCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGGAGTAAGT > 2:571503/1‑76
CGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGT > 2:2046940/1‑76
GCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTG < 2:1571116/76‑1
CGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTT > 2:440962/1‑76
CGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTT > 1:1008505/1‑76
GCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCAGTAGGTAGTAAGTGCTTCA < 2:1078815/76‑1
AACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATT > 2:38307/1‑76
ACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTT > 1:1506405/1‑76
ACGCCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTT < 1:1155006/76‑1
CGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTT > 2:356481/1‑76
CTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTC > 1:699250/1‑76
TGAGTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGC > 1:317188/1‑76
TGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGATCGTGC > 1:1292885/1‑76
GACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCG > 2:963363/1‑76
GACGAAGTCCTAGTGGTTCGCGAGCATTACGCGGGCGGGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCG < 1:475856/76‑1
ACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGT > 2:1361659/1‑76
TAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGG < 1:1462833/76‑1
TAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGG > 1:1537366/1‑76
TAAGGCCTAGTTGTTCGCGAGAATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGG < 1:1462844/76‑1
AAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGC > 1:1160389/1‑76
AAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGC > 2:1402764/1‑76
CTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAG > 2:915321/1‑76
TAGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGT < 2:1828786/76‑1
AGTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTA > 1:2002582/1‑76
GTTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTAT > 2:683727/1‑76
TTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATT < 2:473948/76‑1
TTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATT > 2:1665219/1‑76
TTGTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATT > 1:733928/1‑76
GTTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCA > 1:1416800/1‑76
GTTCGCGAGATTTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCA < 1:1264586/76‑1
TTCGCGAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCAT > 2:1411191/1‑76
GAGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCT > 2:182295/1‑76
AGCATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTG < 2:1431652/76‑1
GCATTACGCGGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGC < 1:1635490/76‑1
CATTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGGGCGGGGCTTCAGTATTCATTCGCTGCc > 1:1157382/1‑75
TTACGCGGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGG < 1:574896/76‑1
TTACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGG > 2:192372/1‑76
TACGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGT > 1:778289/1‑76
CGCGGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCTTGGCTTCAGTATTCATTCGCTGCAGGTAC < 2:54698/76‑1
CGCGGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTAC < 2:69807/76‑1
CGCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTAC < 2:614167/76‑1
GCAGGCGAGCGCCGGTAGGTAGTAAGTGTTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACG > 1:1404722/1‑76
GCAGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACG > 1:1712752/1‑76
AGGCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTT > 2:1470879/1‑76
GCGAGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTA > 2:1865936/1‑76
AGCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAAT < 2:1691844/76‑1
GCGCCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATG < 1:360189/76‑1
CCGGTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGA > 2:1099464/1‑76
GTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATT > 1:1182233/1‑76
GTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATT < 1:782967/76‑1
GTAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATT < 2:1958882/76‑1
TAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTG > 2:1310532/1‑76
TAGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTG > 1:471883/1‑76
AGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTGA > 2:62337/1‑76
AGGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTGA > 1:161038/1‑76
||||
TTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTAAGTCCTAGTTGTTCGCGAGCATTACGCAGGCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2563545‑2563618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAGTAAGTGCTTCATTTTGGTCGTGCGTGGCTTCAGTATTCATTCGCTGCAGGTACGTTTAAATGAGAATTGA > REL606/2563619‑2563693
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
