Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A66 F1 I1 R1
|
19 |
57.4 |
3651244 |
97.1% |
3545357 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
1,976,782 |
IS150 (+) +3 bp |
coding (39‑41/672 nt) |
yedW ← |
predicted DNA‑binding response regulator in two‑component system with YedV |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
664688 = | NA (NA) | 50 (0.900) |
33/146 |
0.8 |
90.5% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 1976784 |
5 (0.090) | coding (39/672 nt) |
yedW |
predicted DNA‑binding response regulator in two‑component system with YedV |
| * |
? |
REL606 |
1976782 = | 5 (0.090) | 63 (1.100) |
47/150 |
0.2 |
92.4% |
coding (41/672 nt) |
yedW |
predicted DNA‑binding response regulator in two‑component system with YedV |
| ? | REL606 |
2774435 = |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664758‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGGGCTTTA < REL606/1976784‑1976710
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGT > 1:1229457/1‑76
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCA < 1:1177871/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGG < 2:1314139/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGG < 2:1314156/76‑1
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGG > 1:1754201/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGG > 1:1284349/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGC > 2:781031/1‑76
TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCT < 2:1681366/76‑1
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTT < 1:805718/76‑1
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTT < 1:204120/76‑1
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTT > 1:1610322/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGAAACGCAGGGGCTT < 2:1803348/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCC > 2:581688/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCC > 2:1626421/1‑76
ATATTAGGGGCTATTGCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGA > 1:1568594/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGA > 1:470558/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGA > 1:424657/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGA < 1:265042/76‑1
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGA < 2:1258576/76‑1
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAG > 1:1244322/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCG > 1:1057484/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCG > 1:1491744/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGG > 2:1079289/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGG < 1:473858/76‑1
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGG < 2:1064052/76‑1
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTA < 2:843257/76‑1
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTA < 2:400372/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTAT < 1:319746/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTAT > 1:786787/1‑76
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTAT < 1:120661/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTAT < 1:1164362/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTAT < 1:1097569/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATG < 1:887578/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATG > 2:771032/1‑76
CATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATT > 2:1233819/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTG > 1:1794264/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTG > 2:710180/1‑76
TTCATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGAT > 1:150388/1‑76
ATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCC < 1:1480072/76‑1
ATCGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCC > 2:1417604/1‑76
CGTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGT > 1:1071722/1‑76
GTCCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTCCCGAAGCGGGTTATGTCATTGATGCCGTT > 1:1059709/1‑76
CCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTC < 2:992684/76‑1
CCAACAAAATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTC < 2:525612/76‑1
AATGGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGC < 1:990803/76‑1
GGGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGA > 2:1433470/1‑76
GGTGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAG < 2:547994/76‑1
TGCAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGAT > 1:1151575/1‑76
CAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGG > 2:1374021/1‑76
CAGTACAGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGG > 1:598124/1‑76
AGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGGGCTTTA > 1:1421479/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664758‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGAGTGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGGGCTTTA < REL606/1976784‑1976710
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
