Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A79 F1 I1 R1
|
19 |
52.0 |
3333102 |
95.7% |
3189778 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,538 |
T→G |
K8Q (AAA→CAA) |
iclR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,538 | 0 | T | G | 100.0%
| 153.1
/ NA
| 37 | K8Q (AAA→CAA) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (10/27); total (10/27) |
TCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAG > REL606/4202466‑4202610
|
tCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGGTgcgc > 2:82836/1‑76 (MQ=255)
cACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGGTGCGCggggag > 2:623899/1‑73 (MQ=255)
aCGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATg < 2:147221/76‑1 (MQ=255)
cgcgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTGCGCGGGGATgg > 2:278192/1‑76 (MQ=255)
cgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTGCGCGGGGATgggg > 2:1364413/1‑75 (MQ=255)
tAAAGACTGAACCTGTCCATTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCg < 1:987831/76‑1 (MQ=255)
aaaGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTGCGCGGGGATGGGGGCgg > 1:853978/1‑75 (MQ=255)
aaGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGGATGGGGGGGAc > 2:237374/1‑76 (MQ=255)
cTGAACCTGTCCAGTCGCTCGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATg < 1:934103/76‑1 (MQ=255)
tGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGa < 1:368645/76‑1 (MQ=255)
tGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGa < 2:894183/76‑1 (MQ=255)
gAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGAc < 1:950294/76‑1 (MQ=255)
acccTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACa < 1:901357/74‑1 (MQ=255)
aaCCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACa < 2:278858/76‑1 (MQ=255)
aaCCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACa < 1:313287/76‑1 (MQ=255)
ccTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGt < 2:654551/76‑1 (MQ=255)
ccTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGt < 1:479786/76‑1 (MQ=255)
ccTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGt < 2:1461634/76‑1 (MQ=255)
tGTCCAGTCGCTGGTGCGGTGGCACCGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGtct < 2:482417/76‑1 (MQ=255)
gTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGtctc < 1:115334/76‑1 (MQ=255)
gTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGGATGGGTGGGGCCCTGACAGtctc > 1:1468792/1‑76 (MQ=255)
gTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGGATGGGGGGGGCCATGACAGgctc > 2:1137234/1‑76 (MQ=255)
aGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCttt < 1:1134882/76‑1 (MQ=255)
tCGCTGGTGCGGTGGCAACGGCGGGGTTTTTTCCGCGTTGCGCGGGGATGGGGGCGGCCATGACAGTCTCCttttt > 1:1002480/1‑76 (MQ=255)
tCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCCCGGTGCGCGGGGATGGGGGCGGGCCTGACAGCCTCCctttt > 1:979139/1‑76 (MQ=255)
gCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGGTGCGCGGGGATGGGGGGGGCCCTGACAGGCTCCttttttt > 1:887720/1‑74 (MQ=255)
gCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGAATGGGGGCGACCATGACAGGCTCCTTTTTCt > 1:1509522/1‑76 (MQ=255)
ggTGCGGTGTAAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGTGTGCGACCATGACAGTCTCCTTTTTCTGTa < 2:807435/76‑1 (MQ=255)
ggTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGGATGGGGGCGACCCTGACAGTCTCCTTTTTCtttt > 2:1564736/1‑73 (MQ=255)
tGGCAACGGCGGGGTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTTTGTATCGTGGa > 2:405809/1‑76 (MQ=255)
tGGCAACGGCGGGGTTTCTGCCGCGGTGCGCGGGGATGGGTGCGGCCATGACAGTCTCCTTTTTCTGTATCGTggg > 2:1229690/1‑75 (MQ=255)
gCAACGGCGGGGTTTCTGCCGCGGTGCGCGGGGATGGGGGCGACCATGACCGTCTCCTTTTTCTTTTTCGTGGgaa > 2:962062/1‑76 (MQ=255)
cAACGGCGGGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAt < 1:185572/76‑1 (MQ=255)
cggcggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcat < 1:1464046/76‑1 (MQ=255)
cggcggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcat > 1:1654738/1‑76 (MQ=255)
ggcggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatt > 1:451484/1‑76 (MQ=255)
ggcggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatt > 1:1526888/1‑76 (MQ=255)
cggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttt < 1:543854/76‑1 (MQ=255)
cggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttt < 1:442807/76‑1 (MQ=255)
cggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttt > 1:1610733/1‑76 (MQ=255)
cggGTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcatttt > 1:1593620/1‑76 (MQ=255)
ggTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcattttca > 2:1150329/1‑76 (MQ=255)
gTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcattttcat < 1:1529730/76‑1 (MQ=255)
gTTTTCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcattttcat < 1:1106073/76‑1 (MQ=255)
tttCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcattttcattt > 2:827311/1‑76 (MQ=255)
tttCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAAtcattttcattt > 1:484664/1‑76 (MQ=255)
ttCTGCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATcattttcatttt < 1:340871/76‑1 (MQ=255)
gCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt < 2:903782/76‑1 (MQ=255)
gCCGCGTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt > 2:950152/1‑76 (MQ=255)
gcgTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGtt < 1:1142886/76‑1 (MQ=255)
gTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAg < 2:693996/76‑1 (MQ=255)
gTTGCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAg < 1:108856/76‑1 (MQ=255)
|
TCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAG > REL606/4202466‑4202610
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
