Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
18 |
29.2 |
1933165 |
95.1% |
1838439 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
2,448,493 |
IS186 (–) +6 bp |
intergenic (+24/+21) |
nupC → / ← yfeA |
nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2448493 = | 1 (0.040) | 36 (1.270) |
27/144 |
0.2 |
97.1% |
intergenic (+24/+26) |
nupC/yfeA |
nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
| ? | REL606 |
2772854 = |
NA (NA) | noncoding (1/1343 nt) |
IS186 |
repeat region |
| * |
? |
REL606 |
= 2448498 | 0 (0.000) | 32 (1.130) |
26/144 |
0.2 |
100% |
intergenic (+29/+21) |
nupC/yfeA |
nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
| ? | REL606 |
= 2774196 |
NA (NA) | noncoding (1343/1343 nt) |
IS186 |
repeat region |
ATCTGCAAGGGTATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2448565‑2448493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAC > REL606/2772854‑2772931
ATCTGCAAGGGTATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCC > 2:488382/1‑76
CAAGGGTATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAG > 1:26019/1‑76
AAGGGTATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGC > 1:280136/1‑76
TATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAA > 2:493412/1‑76
TTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTT > 1:47887/1‑76
TTGATTGGTCGCCCGCAGACATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTT < 1:733339/76‑1
GATTGGCCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAA > 1:146171/1‑76
ATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGTGAATTATCCCATAAGCGCTAACTTAAG < 1:89529/76‑1
ATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAG < 1:147898/76‑1
GGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGT < 2:96270/76‑1
CGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGT > 2:920660/1‑76
CGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGT < 2:919356/76‑1
CCCGCAGCTATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTACCTTAAGGGTTGTGG > 2:633207/1‑76
CCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGT > 1:90290/1‑76
CGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCGATAAGCGCTAACTTAAGGGTTGTGGTA > 1:559770/1‑76
AGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA < 2:507273/76‑1
GCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC < 1:483417/76‑1
GCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC < 1:68429/76‑1
CATTAGCTGATTCACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGC > 2:153752/1‑76
CATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGC > 1:651488/1‑76
CATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGC > 2:230409/1‑76
TTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCT < 2:556953/76‑1
TAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG > 1:578363/1‑76
AACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > 1:342729/1‑76
ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTA < 1:382117/76‑1
ACAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTA < 1:294286/76‑1
CAGGCGTAAAAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 2:47887/76‑1
AAAAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATAATTTAACGTGCCGAT < 2:609047/76‑1
AAACCGGGGAATTATCCCNTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAGGTGCCGATGA < 1:758615/76‑1
AAACCGGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA < 2:741057/76‑1
ACCGGGGAATTATCCCATAAGCGCTAACTGAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 2:90290/76‑1
AATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC < 1:28606/76‑1
nTTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTGTCA < 1:837457/75‑1
ATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA < 1:681565/76‑1
ATTATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:907116/1‑76
aaCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCTGATGAATTACTCTCACGA < 2:873443/74‑1
ATCCCATAAGCGCGAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGA < 2:49810/76‑1
TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCATGATATGATTTAACGTGCCGATGAATTACTCTCACGAT < 1:685479/76‑1
CCCATAAGCGCTAACTTAATGGTTGTGGTATTACGCCTGATATGATTTGACGTGCCGATGAATTACTCTCACGATA < 1:94729/76‑1
CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATA < 2:943641/76‑1
CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATA < 1:168653/76‑1
CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA < 1:485685/76‑1
CATAAGTGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAC < 1:869770/76‑1
CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAC > 1:368955/1‑76
ATCTGCAAGGGTATTTGATTGGTCGCCCGCAGCCATTAGCTGATTAACAGGCGTAAAAAAACCGGGGAATTATccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2448565‑2448493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAC > REL606/2772854‑2772931
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
