Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I1 R1
|
20 |
51.0 |
3438118 |
91.8% |
3156192 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,348,313 |
C→A |
L117L (CTG→CTT) |
nuoA ← |
NADH dehydrogenase subunit A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,348,313 | 0 | C | A | 100.0%
| 112.3
/ NA
| 30 | L117L (CTG→CTT) | nuoA | NADH dehydrogenase subunit A |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (24/6); total (24/6) |
TGTTCGTTTCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACCAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAGCCGCT > REL606/2348243‑2348381
|
tGTTCGTTTCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATa < 1:1416062/76‑1 (MQ=255)
tGTTAGTCTCCGGGTTCATACGCTCGCGGCGTGAACGGGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATa < 2:1678661/76‑1 (MQ=255)
ttCGTTTCCGGGTTCATACGCTCGCGGCGTGAACGCACGGTCGTCCAGTCCAGCGCGCCAATACGCACAAGATaaa > 2:1361200/1‑76 (MQ=255)
tCGTTTCCGGGTTCATCCGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAAc < 1:987334/76‑1 (MQ=255)
cGTTTCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAAcc < 2:757859/76‑1 (MQ=255)
gTTTCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCa > 1:888430/1‑76 (MQ=255)
ttCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGa < 1:933136/76‑1 (MQ=255)
tCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGGCCCGCGCGCCAACACGCACAAGAAAAACCAGAc > 1:307976/1‑76 (MQ=255)
ccGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGAcc > 2:1256447/1‑76 (MQ=255)
gggTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTg > 2:1479052/1‑76 (MQ=255)
gTTCATCCGCCCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGcc < 2:1528575/76‑1 (MQ=255)
gTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGcc > 2:776569/1‑76 (MQ=255)
cATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGt > 2:695174/1‑76 (MQ=255)
cgcgGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGACAGTAACACaaa > 2:1567183/1‑76 (MQ=255)
cgcgGCGCGACCGCGCGGGCGCCCACCCCAGCGCGCAAATACGCAAAAAAAAACCCAGCCCTGCCAGTAACACaaa < 2:804690/76‑1 (MQ=255)
cggcgTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACaaaaa > 1:429088/1‑76 (MQ=255)
cgTGAACGCGCGGGCGTCCATTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACaaaaataa > 2:137723/1‑76 (MQ=255)
cgTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACaaaaataa > 1:1409886/1‑76 (MQ=255)
gAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACaaaaataaaaa > 2:459950/1‑76 (MQ=255)
agcgcgcgGGCGTCCAGCCCAGCGCGCCAATACGCAAAAGAAAACCCAGCCCTGCCAGTAACACaaaaataaaaat < 1:1228482/74‑1 (MQ=255)
ggggCGCCCACACCAGCGCGCAAATCCACATAAAAAAANCCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGc < 1:1675036/75‑1 (MQ=255)
cgGGCGTCCAGTCCAGCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGc > 1:807128/1‑76 (MQ=255)
cccagtccagCGCCCCAATACCCAAAAAAAAACCCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCcac < 1:1445745/75‑1 (MQ=255)
cccagcccagcCCCCAAATCCGCAAAAAAAAAACCAGCCCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCcac < 1:1601265/75‑1 (MQ=255)
ccagtccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAATTAAAAATTGCAGCTTCcaca > 1:1694491/1‑76 (MQ=255)
tccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGc > 2:1114521/1‑76 (MQ=255)
ccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGcc > 1:522555/1‑76 (MQ=255)
ccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGcc > 1:410309/1‑76 (MQ=255)
ccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGcc > 1:1634859/1‑76 (MQ=255)
ccagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGcc > 1:1325385/1‑76 (MQ=255)
cagCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCt > 1:1440767/1‑76 (MQ=255)
agCGCGCCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTa > 1:647128/1‑76 (MQ=255)
gcgcCAACACGCAAAAAAAAACCCAGCCCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTAccc < 2:1314411/76‑1 (MQ=255)
gcCAATACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAg > 1:1339896/1‑76 (MQ=255)
aaTACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAGCCg > 2:1217061/1‑76 (MQ=255)
tACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAGCCGCt > 1:752035/1‑76 (MQ=255)
tACGCACAAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAGCCGCt > 1:1559465/1‑76 (MQ=255)
|
TGTTCGTTTCCGGGTTCATACGCTCGCGGCGTGAACGCGCGGGCGTCCAGTCCAGCGCGCCAATACGCACCAGATAAACCAGACCTGCCAGTAACACAAAAATAAAAATTGCAGCTTCCACAAAGCCTACCCAGCCGCT > REL606/2348243‑2348381
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
